Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30681
(457 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7) 28 3.2
SB_10425| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 28 4.2
SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0) 27 7.4
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2) 27 7.4
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_42842| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_20112| Best HMM Match : EGF (HMM E-Value=0) 27 9.7
SB_9163| Best HMM Match : XS (HMM E-Value=0.84) 27 9.7
SB_37766| Best HMM Match : IncA (HMM E-Value=0.4) 27 9.7
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_44254| Best HMM Match : Rho_N (HMM E-Value=5.7)
Length = 209
Score = 28.3 bits (60), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 456 GGRQMCQIFRLVFKHCKSLVLGEHEKAF 373
G Q+C + R +HCK L+L H AF
Sbjct: 45 GRMQVCTVLRSTERHCKKLILA-HGNAF 71
>SB_10425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 447 QMCQIFRLVFK--HCKSLVLGEHEKAFIHFFLSRCEYEFRDRYRSFFLRRNDGDYSAVS 277
Q QI F H +V+ E A+I+ SR + F++R + + DGD AVS
Sbjct: 66 QQLQILESTFSKTHYPDVVMREQLAAYINIPESRIQVWFKNRRAKYRKQVKDGDEPAVS 124
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = -3
Query: 194 WCAANTSSLHSIPHDARRDRCVAKQVCLV*SGRLACYRAGG 72
WC N S D R D+ KQVC+ S C GG
Sbjct: 214 WCDLNFSKRDDKRDDKRDDKRDGKQVCIGGSCLFRCNSKGG 254
>SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0)
Length = 945
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/66 (19%), Positives = 28/66 (42%)
Frame = +1
Query: 160 IECKDEVFAAHQVQHADLKPKLPAVASPGVSFRAPVETLANGAIVAIVTPEEERPIPVTE 339
++ + ++V D +P L A + T ++G PE P+P+++
Sbjct: 116 VQVNGRTYRRNRVHLRDAQPDLSAAQGHSAPEPSHEATKSSGMSTCSPAPEPSGPVPISK 175
Query: 340 LIFAPR 357
++ A R
Sbjct: 176 ILVANR 181
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.1 bits (57), Expect = 7.4
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +2
Query: 188 HTKCSTPI*NRSCQLSRRRA-SPSVHPSKHSLTAL*SPSLRRRKNDLYRSRNSYS----H 352
H + +P R + RRR+ SP+ H S + SP RRR R R S S H
Sbjct: 194 HHRSLSPEPRRGYRDQRRRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHH 253
Query: 353 RERKK*IKAFSCSPKTR 403
R + ++ S SP+ R
Sbjct: 254 RSHRS--RSRSRSPRRR 268
>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
Length = 1056
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 3 SSQAYTPRGHPTAPGRSREPIS*SACPIARKP 98
S+ A P G P P RS+ P + C I +P
Sbjct: 474 STYATEPEGSPKTPPRSQRPDGPAGCSILSQP 505
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 239 RRASPSVHPSKHSLTAL*SPSLRRRKNDLYRSRNSY---SHRERKK*IKAFSCSPKTRDL 409
R PS P + S SPS RR D RSR S S +R+ ++ S SP R+
Sbjct: 1054 RERRPSSSPPRRSRPQRTSPSPRRTPEDRRRSRGSRRSPSPPKREPRRRSPSASPPRREA 1113
Query: 410 QCLKTSR 430
+ SR
Sbjct: 1114 RKRSLSR 1120
>SB_42842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 356 LGANMSSVTGIGRSSSGVTMATIAPLASVS 267
+ A + S G+G S SG+ + T APLA V+
Sbjct: 241 IAAGVLSSAGLGVSLSGIGVLTGAPLAGVA 270
>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
Length = 2112
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 241 ATRQLAASVSNRRAALGVRQTPHLCTRYRMMRDAIDVLPNKFVWCD 104
A R L S +NR A + +TP R R D +++L + + C+
Sbjct: 1701 AVRILLLSYANRMIADNMDKTPEEVARQRAHNDIVELLSDWSIGCN 1746
>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
Length = 424
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 350 ANMSSVTGIGRSSSGVTMATIAPLASVSTGARKE-TPGDATAGSFGFKSACCTWCAANTS 174
A+ ++ G G+ S T+ T +P S G + TPG AGS G + T +T
Sbjct: 14 ASNGNLPGTGQMGSPGTVQTGSPGIDHSHGTGQTGTPGTGKAGSTGIDHSHGTGQTGSTG 73
Query: 173 SLHS 162
+ H+
Sbjct: 74 TSHA 77
>SB_37766| Best HMM Match : IncA (HMM E-Value=0.4)
Length = 585
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 374 LFISFFLGANMSSVTGIGRSSSGVTMATIAPLASVS 267
+F++ + A + S G+G S SG+ + APLA V+
Sbjct: 435 VFVASGIAAGVLSSAGLGVSLSGIGVLIGAPLAGVA 470
>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 26.6 bits (56), Expect = 9.7
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +1
Query: 211 LKPKLPAVASPGVSFRAPVETLANGAIVAIV--TPEEERPIPVTELIFAPRKK--EMNKG 378
LKPK+ + + + + + T ANGA+ IV T +E V +L+F R++ E N+
Sbjct: 784 LKPKMSYITNFTIGYVFGIATFANGAVNPIVYLTCMQEVRERV-KLLFMRRERMVERNQK 842
Query: 379 FLMFSQDEG 405
FL+ ++ G
Sbjct: 843 FLLATRMAG 851
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,437,993
Number of Sequences: 59808
Number of extensions: 311166
Number of successful extensions: 1194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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