Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30681
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    30   0.92 
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    30   0.92 
Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U00025-2|ABA54414.1|  418|Caenorhabditis elegans Amp-activated k...    29   2.1  
U00025-1|ABA54413.1|  589|Caenorhabditis elegans Amp-activated k...    29   2.1  
AY347272-1|AAR06927.1|  589|Caenorhabditis elegans AMP-activated...    29   2.1  
Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical...    27   4.9  
AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid tr...    27   4.9  
U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical pr...    27   6.5  
L16559-1|AAA27934.2|  397|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z70308-10|CAA94345.2|  505|Caenorhabditis elegans Hypothetical p...    27   8.6  

>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 206 PI*NRSCQLSRRRASPSVHPSKHSLTAL*SPSLRRRK 316
           P+ N+S  +S     PS HPS  SLT    PS   R+
Sbjct: 518 PVLNQSVPISITSNGPSRHPSSSSLTTFRKPSTSNRE 554


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 206 PI*NRSCQLSRRRASPSVHPSKHSLTAL*SPSLRRRK 316
           P+ N+S  +S     PS HPS  SLT    PS   R+
Sbjct: 518 PVLNQSVPISITSNGPSRHPSSSSLTTFRKPSTSNRE 554


>Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical
           protein K02B12.3 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 275 SVSTGARKETPGDATAGSFGFKSACCTWCAANTSSLHSIPH 153
           S+    + ETPG A+    GF+SA  T  A  T  LH +P+
Sbjct: 359 SICEDIQSETPGIAS----GFQSAVVTLAADKTMQLHRVPY 395


>U00025-2|ABA54414.1|  418|Caenorhabditis elegans Amp-activated
           kinase protein 1,isoform b protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 304 TPEEERPIPVTELIFAPRKKEMNKGFLM 387
           TP    P+ V+  +FA  KKE NKG+L+
Sbjct: 265 TPINPDPVKVSLQLFALDKKENNKGYLL 292


>U00025-1|ABA54413.1|  589|Caenorhabditis elegans Amp-activated
           kinase protein 1,isoform a protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 304 TPEEERPIPVTELIFAPRKKEMNKGFLM 387
           TP    P+ V+  +FA  KKE NKG+L+
Sbjct: 436 TPINPDPVKVSLQLFALDKKENNKGYLL 463


>AY347272-1|AAR06927.1|  589|Caenorhabditis elegans AMP-activated
           protein kinase alphasubunit 2 protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 304 TPEEERPIPVTELIFAPRKKEMNKGFLM 387
           TP    P+ V+  +FA  KKE NKG+L+
Sbjct: 436 TPINPDPVKVSLQLFALDKKENNKGYLL 463


>Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical
           protein M195.3 protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 238 SPGVSFRAPVETLANGAIVAIVTPEEERPIPVT 336
           S  +    P+E +    + A V P EERP P T
Sbjct: 569 STAIEIEQPIEAVPPEVVAAAVLPPEERPGPST 601


>AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical
           protein Y38E10A.4 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = -3

Query: 338 SVTGIGRSSSGVTMATIAPLASVSTGARKETPGDATAGSFGFKSACCTWCAANTSSLHSI 159
           S   I + + G+  + ++P+ +    A   T      G+    ++  TW   ++ S H+I
Sbjct: 180 SAQKICKENCGIIASILSPMENRYINANFYTYSALLIGATWSYNSSYTWFDGSSWSYHNI 239

Query: 158 PHDARR 141
            H ARR
Sbjct: 240 DHTARR 245


>AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid
           transporter protein 3 protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 214 KPKLPAVASPGVSFRAPVETLANGAIVAIVTPEEERPIPVTELIFAPRKKEMNKGFLMF 390
           K  LP   +   S    + TL N A+   +TP+E    P   ++FA    E N G+  F
Sbjct: 254 KRNLPLSIAISCSLCTIIYTLTNVALYTSITPDEMLASPAVAVLFA----EKNYGWFAF 308


>U40059-1|AAA81138.3|  867|Caenorhabditis elegans Hypothetical
           protein K03C7.1 protein.
          Length = 867

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/51 (37%), Positives = 20/51 (39%)
 Frame = +1

Query: 214 KPKLPAVASPGVSFRAPVETLANGAIVAIVTPEEERPIPVTELIFAPRKKE 366
           K K P V         PV   A   I  I  PEE  P+P  E   A R KE
Sbjct: 566 KKKKPVVEPEKEPTPEPVVPKAPKWIAPIKKPEEPIPMPPKEKTIAERNKE 616


>L16559-1|AAA27934.2|  397|Caenorhabditis elegans Hypothetical
           protein C06E1.3 protein.
          Length = 397

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 323 GRSSSGVTMATIAPLASVSTGARKETPGDATAGSFGFKSACCTWCAANTSS 171
           G +  GV +       + S+  + +   D TAGS GF+S   T C ++ SS
Sbjct: 313 GPALQGVQIGAYGTNTTNSSRDKNDISSDKTAGSSGFQSRTST-CQSSASS 362


>Z70308-10|CAA94345.2|  505|Caenorhabditis elegans Hypothetical
           protein F49E11.3 protein.
          Length = 505

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = -3

Query: 350 ANMSSVTGIGRSSSGVTMATIAPLASVSTGARKETPGDATAGSFGFKSACCTWCAANTSS 171
           A  S+V  +G  S  V    + P  +        T  D T    GF      W A NTSS
Sbjct: 181 AGCSAVHLVGGVSGLVATLYLKPRRNRFAKNGIRTVSDPTKAILGFLMIWWGWLAFNTSS 240

Query: 170 LHSIPH 153
            +++ H
Sbjct: 241 NYAVTH 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,317,918
Number of Sequences: 27780
Number of extensions: 223156
Number of successful extensions: 757
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)