Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30681
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   2.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 271 TLANGAIVAIVTPEEERP 324
           TLA+     IV+P+EERP
Sbjct: 209 TLADQIKNGIVSPQEERP 226


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 271 TLANGAIVAIVTPEEERP 324
           TLA+     IV+P+EERP
Sbjct: 204 TLADQIKNGIVSPQEERP 221


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -3

Query: 206 ACCTWCAAN 180
           +CC WC  N
Sbjct: 10  SCCCWCCDN 18


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 18  TPRGHPTAP 44
           TP GHP+ P
Sbjct: 127 TPNGHPSTP 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,608
Number of Sequences: 438
Number of extensions: 2979
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)