Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30681
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29350.1 68414.m03588 expressed protein                             29   1.1  
At3g52340.2 68416.m05753 sucrose-phosphatase 2 (SPP2) identical ...    28   3.4  
At3g52340.1 68416.m05752 sucrose-phosphatase 2 (SPP2) identical ...    28   3.4  
At1g29370.1 68414.m03591 kinase-related similar to putative prot...    28   3.4  
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam...    27   4.5  
At3g59180.1 68416.m06598 hypothetical protein contains a novel d...    27   6.0  
At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi...    27   7.9  

>At1g29350.1 68414.m03588 expressed protein
          Length = 831

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 307 PEEERPI-PVTE-LIFAPRKKEMNKGFLMFSQDEGLTMLKDEPEDLTHLA 450
           P  E+P+ P T  L  AP + E+  G   F  D G   LKD  E++ H+A
Sbjct: 236 PSIEKPLAPSTSSLSVAPAESEVRNGLADFQSDRGDQYLKDRLENI-HIA 284


>At3g52340.2 68416.m05753 sucrose-phosphatase 2 (SPP2) identical to
           sucrose-phosphatase (SPP2) [Arabidopsis thaliana]
           GI:13811669; supporting cDNA
           gi|13811668|gb|AF356816.1|AF356816
          Length = 423

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 252 GDARRRDSWQLRFQIGVLHLVCGKHLIFALDTA*CETRSMCCQTSL 115
           GD R +  W    Q+ V   + GK ++       CE  S CC+T++
Sbjct: 345 GDKRGKKFWVWVDQVLVTDTIPGKWIVKFDKWEQCEDESQCCKTTV 390


>At3g52340.1 68416.m05752 sucrose-phosphatase 2 (SPP2) identical to
           sucrose-phosphatase (SPP2) [Arabidopsis thaliana]
           GI:13811669; supporting cDNA
           gi|13811668|gb|AF356816.1|AF356816
          Length = 423

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 252 GDARRRDSWQLRFQIGVLHLVCGKHLIFALDTA*CETRSMCCQTSL 115
           GD R +  W    Q+ V   + GK ++       CE  S CC+T++
Sbjct: 345 GDKRGKKFWVWVDQVLVTDTIPGKWIVKFDKWEQCEDESQCCKTTV 390


>At1g29370.1 68414.m03591 kinase-related similar to putative protein
           kinase (GI:11125348) [Homo sapiens]; similar to Paired
           box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris]
          Length = 831

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 307 PEEERPI-PVTE-LIFAPRKKEMNKGFLMFSQDEGLTMLKDEPEDLTHLA 450
           P  E+P+ P T  L  AP + E+  G   F  D G   LKD  E++ H+A
Sbjct: 236 PSIEKPLAPSTSSLSVAPAESEVRNGPADFQSDRGDQYLKDRLENI-HIA 284


>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
            domain, PF00628: PHD-finger
          Length = 1566

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 298  IVTPEEERPIPVTELIFAPRKKEMNKGFLMFSQDE 402
            +V PE E   PV E   +     MN+G LMF  ++
Sbjct: 1424 VVKPEMEPTFPVMEWDASGNSNNMNEGELMFDYED 1458


>At3g59180.1 68416.m06598 hypothetical protein contains a novel
           domain with similarity to F-box domain;
          Length = 475

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 447 QMCQIFRLVFKHCKSLVLGEHEKAFIH 367
           Q+  I  + + HCK+++L +H + +IH
Sbjct: 9   QVLWILWIEYWHCKAILLSKHRRRWIH 35


>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 736

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 390 EHEKAFIHFFLSRCEYEFRDRY 325
           EHEKA  H    R EYE R+ Y
Sbjct: 425 EHEKASQHLEAQRKEYEDRENY 446


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,756,974
Number of Sequences: 28952
Number of extensions: 201593
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)