Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30680
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...   100   2e-22
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    30   0.19 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    28   1.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   5.4  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.5  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score =  100 bits (239), Expect = 2e-22
 Identities = 47/71 (66%), Positives = 56/71 (78%)
 Frame = +2

Query: 17  VKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREAN 196
           VKV+ D  TD +LG H+IGP  GELI EA LA EYGA+AEDVARVCHAHPT +EA +EA 
Sbjct: 441 VKVIVDAETDRLLGVHMIGPMAGELIGEATLALEYGASAEDVARVCHAHPTLSEATKEAM 500

Query: 197 LAAYSGKPINF 229
           +AA+ GK I+F
Sbjct: 501 MAAWCGKSIHF 511


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 50  ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEAL 184
           ++G H++G    E++    +A + GA   D       HPT AE L
Sbjct: 416 VVGLHLVGDFSAEILQGFGVAIKMGATKSDFDSCVAIHPTSAEEL 460


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +1

Query: 172  CRSAT*SKSSSVLRKTNQLLNVEVLII 252
            C SA  SKSS +L KT Q L+  VLII
Sbjct: 1262 CTSALDSKSSLLLEKTIQNLSCTVLII 1288


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -2

Query: 178 FGTCRMRVTDSRNVFSSGTILLREYSLVDQLTTARANNVSPKDY 47
           +G C   + +S N+FS   I+     +VD ++  R+NN+SPK Y
Sbjct: 347 YGICDW-IPNSSNMFSM--IVKNSLYIVD-ISNIRSNNISPKVY 386


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 133 SSGTILLREYSLVDQLTTA-RANNVSPKDYVCSLIGKHFDET 11
           +S   L    SLV    +A R++++S   Y  +L+GK  DE+
Sbjct: 205 TSSKSLASNTSLVQSFNSASRSSSISGNQYTYNLLGKSTDES 246


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 275  VFSLYCVRFKESCMNESDLKGIVPRTFLNIK 367
            +F+L C RFK+   ++SD +  V    L+ K
Sbjct: 1581 LFALECNRFKKMSQDQSDQENFVAAALLSQK 1611


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 251 LMNPMNNWVFSLYCVRFKESCMNESDLKGIV 343
           + NP N+W     C+  KE  + E  +K I+
Sbjct: 667 MQNPGNDWDMIRACIGSKEILVPEETIKNIL 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,770
Number of Sequences: 5004
Number of extensions: 33124
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)