Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30680
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)         116   2e-26
SB_3038| Best HMM Match : Pyr_redox_dim (HMM E-Value=4e-37)            38   0.004
SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)               35   0.048
SB_25997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_43312| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
          Length = 387

 Score =  116 bits (278), Expect = 2e-26
 Identities = 53/71 (74%), Positives = 59/71 (83%)
 Frame = +2

Query: 17  VKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREAN 196
           VKVL DK TD +LG H+I PG GELINEA LA EYGA+ ED+ARVCHAHPT +EA REAN
Sbjct: 317 VKVLGDKETDRLLGVHMICPGAGELINEAALAMEYGASCEDIARVCHAHPTVSEAFREAN 376

Query: 197 LAAYSGKPINF 229
           LAAY+GK INF
Sbjct: 377 LAAYAGKAINF 387


>SB_3038| Best HMM Match : Pyr_redox_dim (HMM E-Value=4e-37)
          Length = 128

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 50  ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLAAYSGK 217
           ++G H +GP  GE++    +A   G     ++     HPTCAE + + ++   SG+
Sbjct: 66  VIGLHYLGPNAGEVMQGFAVAIRCGLTMRMLSSTVGIHPTCAEEVVKLHITKRSGE 121


>SB_34493| Best HMM Match : Pyr_redox_dim (HMM E-Value=0)
          Length = 394

 Score = 34.7 bits (76), Expect = 0.048
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 17  VKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEAL 184
           +K+++    + ++G HI+G G  E++    +A + GA   D       HPT +E L
Sbjct: 335 MKLITLLPEEKVIGLHILGLGADEMLQGFAVAIKMGATKADFDNAVAIHPTSSEEL 390


>SB_25997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 126 PLLKTLRESVTRILHVPKRYVKQI*QRTPEN 218
           P+LK    ++++ + +PK+Y+ +  Q TP N
Sbjct: 124 PILKAEFHTLSQAVEIPKQYITKAEQSTPSN 154


>SB_43312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 426 HK*QCVPSTLSNTLVIIYLSFIFKNVRGT 340
           H   CVPS +S+ L  + L FI+ N   T
Sbjct: 54  HARHCVPSNISSGLATLPLDFIYDNGTST 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,472,355
Number of Sequences: 59808
Number of extensions: 230782
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)