Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30680
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...   113   8e-26
Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical p...    35   0.032
Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical pr...    33   0.17 
Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical pr...    33   0.17 
U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin red...    32   0.23 
AF162693-1|AAD46625.1|  525|Caenorhabditis elegans thioredoxin r...    32   0.23 
AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin r...    32   0.23 

>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score =  113 bits (272), Expect = 8e-26
 Identities = 53/71 (74%), Positives = 58/71 (81%)
 Frame = +2

Query: 14  FVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREA 193
           FVKVL+DK TD +LG HIIGP  GE+I EA LA EYGA+AEDVARVCH HPT +EA REA
Sbjct: 423 FVKVLADKQTDRMLGVHIIGPNAGEMIAEATLAMEYGASAEDVARVCHPHPTLSEAFREA 482

Query: 194 NLAAYSGKPIN 226
           NLAAY GK IN
Sbjct: 483 NLAAYCGKAIN 493


>Z11115-10|CAA77459.1|  503|Caenorhabditis elegans Hypothetical
           protein ZK637.10 protein.
          Length = 503

 Score = 35.1 bits (77), Expect = 0.032
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 50  ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLAAYSGK 217
           ILG H +GP   E+I    +A   G +  D+      HP  +E   + ++   SG+
Sbjct: 439 ILGLHFVGPNAAEVIQGYAVAFRVGISMSDLQNTIAIHPCSSEEFVKLHITKRSGQ 494


>Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical
           protein C46F11.2b protein.
          Length = 459

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 50  ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEAL 184
           ++G H+ G G  E++    +A   GA  +   +    HPT AE L
Sbjct: 405 VVGVHVFGVGSDEMLQGFAVAVTMGATKKQFDQTVAIHPTSAEEL 449


>Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical
           protein C46F11.2a protein.
          Length = 473

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 50  ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEAL 184
           ++G H+ G G  E++    +A   GA  +   +    HPT AE L
Sbjct: 419 VVGVHVFGVGSDEMLQGFAVAVTMGATKKQFDQTVAIHPTSAEEL 463


>U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin
           reductase protein 1 protein.
          Length = 667

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 50  ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLAAYSG 214
           ++G HI+ P  GE+     +A +  A   D  R+   HPT AE      L    G
Sbjct: 602 VVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLIGIHPTVAENFTTLTLEKKEG 656


>AF162693-1|AAD46625.1|  525|Caenorhabditis elegans thioredoxin
           reductase homolog protein.
          Length = 525

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 50  ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLAAYSG 214
           ++G HI+ P  GE+     +A +  A   D  R+   HPT AE      L    G
Sbjct: 460 VVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLIGIHPTVAENFTTLTLEKKEG 514


>AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin
           reductase protein.
          Length = 667

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 50  ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLAAYSG 214
           ++G HI+ P  GE+     +A +  A   D  R+   HPT AE      L    G
Sbjct: 602 VVGFHILTPNAGEVTQGFGIALKLAAKKADFDRLIGIHPTVAENFTTLTLEKKEG 656


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,151,480
Number of Sequences: 27780
Number of extensions: 181362
Number of successful extensions: 455
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)