Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30680
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1, mitoc...    96   1e-20
At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1, mitoc...    96   1e-20
At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2, mitoc...    95   2e-20
At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2, mitoc...    95   2e-20
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast...    44   9e-05
At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast...    43   1e-04
At3g54660.1 68416.m06048 gluthatione reductase, chloroplast near...    33   0.091
At3g24170.1 68416.m03034 glutathione reductase, putative identic...    33   0.091
At3g13980.1 68416.m01765 expressed protein                             28   3.4  
At1g52190.1 68414.m05889 proton-dependent oligopeptide transport...    28   3.4  
At1g47560.1 68414.m05279 expressed protein                             28   3.4  
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)            27   7.9  
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi...    27   7.9  

>At1g48030.2 68414.m05351 dihydrolipoamide dehydrogenase 1,
           mitochondrial / lipoamide dehydrogenase 1 (MTLPD1)
           identical to GB:AAF34795 [gi:12704696] from [Arabidopsis
           thaliana]
          Length = 507

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 45/70 (64%), Positives = 56/70 (80%)
 Frame = +2

Query: 17  VKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREAN 196
           VK+L+DK TD ILG HI+ P  GELI+EAVLA  Y A++ED+ARVCHAHPT +EAL+EA 
Sbjct: 438 VKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497

Query: 197 LAAYSGKPIN 226
           +A Y  KPI+
Sbjct: 498 MATYD-KPIH 506


>At1g48030.1 68414.m05350 dihydrolipoamide dehydrogenase 1,
           mitochondrial / lipoamide dehydrogenase 1 (MTLPD1)
           identical to GB:AAF34795 [gi:12704696] from [Arabidopsis
           thaliana]
          Length = 507

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 45/70 (64%), Positives = 56/70 (80%)
 Frame = +2

Query: 17  VKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREAN 196
           VK+L+DK TD ILG HI+ P  GELI+EAVLA  Y A++ED+ARVCHAHPT +EAL+EA 
Sbjct: 438 VKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAA 497

Query: 197 LAAYSGKPIN 226
           +A Y  KPI+
Sbjct: 498 MATYD-KPIH 506


>At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2,
           mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
           nearly identical to GB:AAF34796 [gi:6984216] from
           [Arabidopsis thaliana]; alternative splice form exists
          Length = 507

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 44/70 (62%), Positives = 56/70 (80%)
 Frame = +2

Query: 17  VKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREAN 196
           VK+L+DK TD ILG HI+ P  GELI+EAVLA  Y A++ED+ARVCHAHPT +EA++EA 
Sbjct: 438 VKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAIKEAA 497

Query: 197 LAAYSGKPIN 226
           +A Y  KPI+
Sbjct: 498 MATYD-KPIH 506


>At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2,
           mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
           nearly identical to GB:AAF34796 [gi:6984216] from
           [Arabidopsis thaliana]; alternative splice form exists
          Length = 507

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 44/70 (62%), Positives = 56/70 (80%)
 Frame = +2

Query: 17  VKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREAN 196
           VK+L+DK TD ILG HI+ P  GELI+EAVLA  Y A++ED+ARVCHAHPT +EA++EA 
Sbjct: 438 VKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAIKEAA 497

Query: 197 LAAYSGKPIN 226
           +A Y  KPI+
Sbjct: 498 MATYD-KPIH 506


>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
           plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159282]
          Length = 570

 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 23/52 (44%), Positives = 28/52 (53%)
 Frame = +2

Query: 50  ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLAA 205
           ILG HI G    +LI+EA  A   G   +D+    HAHPT +E L E   AA
Sbjct: 502 ILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVLDELFKAA 553


>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
           plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159284]
          Length = 567

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 23/57 (40%), Positives = 29/57 (50%)
 Frame = +2

Query: 50  ILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLAAYSGKP 220
           ILG HI G    +LI+EA  A   G   +D+    HAHPT +E + E   AA    P
Sbjct: 499 ILGVHIFGLHAADLIHEASNAIALGTRIQDIKLAVHAHPTLSEVVDELFKAAKVDSP 555


>At3g54660.1 68416.m06048 gluthatione reductase, chloroplast nearly
           identical to SP|P42770 Glutathione reductase,
           chloroplast precursor (EC 1.8.1.7) (GR) (GRASE)
           {Arabidopsis thaliana};  identical to cDNA glutathione
           reductase GI:451197
          Length = 565

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 14  FVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAE 178
           F+K++    T+ +LG H+ G    E+I    +A + G    D       HPT AE
Sbjct: 480 FMKLIVCANTNKVLGVHMCGEDSPEIIQGFGVAVKAGLTKADFDATVGVHPTAAE 534


>At3g24170.1 68416.m03034 glutathione reductase, putative identical
           to GB:P48641 from [Arabidopsis thaliana]
          Length = 499

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 11  SFVKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAE 178
           + +K++ D+ +D ++G  + GP   E++    +A + GA           HP+ AE
Sbjct: 422 TLMKLIVDEKSDKVIGASMCGPDAAEIMQGIAIALKCGATKAQFDSTVGIHPSSAE 477


>At3g13980.1 68416.m01765 expressed protein
          Length = 357

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 160 RVTDSRNVFSSGTILLREYSLVDQLTTARANNVSPKD 50
           RV + R V  +   LLR Y   +++TT   NNV   D
Sbjct: 270 RVEEHRRVIQAAKDLLRTYHNKNKVTTTNINNVEEDD 306


>At1g52190.1 68414.m05889 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 607

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 100 LVDQLTTARANNVSPKDYVCSLIGKHFDETSVS 2
           LVDQ+   R N V  ++ +  ++GK F++  +S
Sbjct: 569 LVDQVRNGRVNGVREEEELIDIVGKGFEKEDLS 601


>At1g47560.1 68414.m05279 expressed protein
          Length = 887

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +2

Query: 17  VKVLSDKTTDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEAL 184
           V    ++  + +LGT++IG G  E  +E +  +     A +V  +  + P   E L
Sbjct: 202 VSQAEEEDMEALLGTYVIGIGEAEAFSERLKRELQALEAANVHAILESEPLVDEVL 257


>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
          Length = 135

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 351 VRGTIPFKSDSFIQDSLKRTQYRLKTQLFIGFINY*HL 238
           V G   + S    +DS K+T  + + + FI  +NY HL
Sbjct: 43  VAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHL 80


>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
           to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
           tuberosum]
          Length = 135

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 351 VRGTIPFKSDSFIQDSLKRTQYRLKTQLFIGFINY*HL 238
           V G   + S    +DS K+T  + + + FI  +NY HL
Sbjct: 43  VAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHL 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,362,459
Number of Sequences: 28952
Number of extensions: 165597
Number of successful extensions: 424
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)