Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30679
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch... 30 0.38
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 30 0.38
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 29 0.87
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc... 28 1.5
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 27 2.7
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 2.7
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 27 3.5
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 4.7
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 26 6.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.1
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 8.1
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 8.1
>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
Tim10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 165 IDHNLITRNHDKCRVSEFYDNVRTLKTVLTVD-CPWLNFESNRTLAQHM 308
I + L+ H KC ++Y+ T + +D C FE+N++L+QHM
Sbjct: 31 IFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSLSQHM 79
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 29.9 bits (64), Expect = 0.38
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Frame = +3
Query: 57 DHLAANSKCIPGRGQIPSQYEIPVFQFEIPYFNATYIDHNLITRNHDKCRVSEFY--DNV 230
+ + + +K I G S Y + +FQ + P F + HD C VS Y D
Sbjct: 186 ERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQAELLMHDHCHVSSDYTHDIA 245
Query: 231 RTL-KTVLTVDCPWLNFESNRTLAQHMSFKE 320
L + +L D L F AQ S +E
Sbjct: 246 HALDRDILERDEIVLQFPYTEAAAQEKSQEE 276
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 185 GNEIMVDVGGVEVWYFKLEHRYLVLR 108
G+E++V G EVW+F +E R +V R
Sbjct: 361 GSEMLVLSYGAEVWHFNVEQRSVVRR 386
>SPBC146.10 |mug57||meiotically upregulated gene
Mug57|Schizosaccharomyces pombe|chr 2|||Manual
Length = 189
Score = 27.9 bits (59), Expect = 1.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 320 FLERHVLSQGPIGFKVQPRTVDG 252
F+ERH+++ PI + + +T+DG
Sbjct: 122 FVERHIITSSPIEWNNEYKTIDG 144
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 9 SPIYRPCFLDDYKCISDHLAANSKCIPGRGQIPS 110
+P Y P FL+ SD + + +P RG I S
Sbjct: 1362 TPSYTPSFLEGSPVFSDEILNRGEYMPHRGSISS 1395
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.1 bits (57), Expect = 2.7
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 381 FDKGNNFDLCSAFTFADLAGGLPIFHI---NPNDQRTAQWLSKDLTLLHIYEREHIFG 545
F+ N+F+ + T + +G + F + +PND QWL K T + I E+ +FG
Sbjct: 837 FEVNNSFNASNVNTNSSFSGPISEFLVELFSPNDDAKQQWLPKK-TYISILEQ--LFG 891
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/70 (21%), Positives = 32/70 (45%)
Frame = +3
Query: 372 TTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHIFGKR 551
T +F G L + L G +PI +P + L+ D ++H+Y + + K
Sbjct: 208 TNIFSSGGGLTLSEKYKLPFL-GSVPI---DPKFGEMIENLTPDSNIVHLYSKTEMSKKF 263
Query: 552 NWLARSFISR 581
+++ F+++
Sbjct: 264 SFITNEFLNQ 273
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 568 PSSAEHSATSVATTERLFSNIIFYFANTFRHMAFSH*KCTIFQKYI 705
PSS++ S+ +++F N ++ F+H A +KY+
Sbjct: 510 PSSSDSDNASLTRIDKIFINDVYQRMQQFKHSAIEEISLPPCRKYV 555
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 712 IYLYIFEKLYTFNAKRPYVEKYLRNRILCWRKVAQWW 602
I+L +L++F R + + + CWR +A WW
Sbjct: 134 IHLVSGNQLHSFRKTRKLILRTFKGIPDCWRSIA-WW 169
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 575 QQNTLRLRLPPLSDFSPT*YSISQILFDIWP 667
++N RLR PP D P +SI Q+L D+ P
Sbjct: 179 RKNFKRLRFPPFDDEEPP-FSIDQLL-DLEP 207
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 108 SQYEIPVFQFEIPYFN--ATYIDHNLITRNHDKCRVSEF 218
S Y + + +F F+ +T D NL +RN DK + F
Sbjct: 209 SNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYF 247
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +3
Query: 204 RVSEFYDNVRTLKTVL-TVDC 263
R+SE Y+ +R + TVL T+DC
Sbjct: 690 RISEHYNELRNVTTVLGTLDC 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,000
Number of Sequences: 5004
Number of extensions: 66596
Number of successful extensions: 229
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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