Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30679
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0105 + 1287423-1289924 30 2.1
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475... 30 2.1
03_05_0447 - 24421442-24422767 29 3.7
10_08_0418 - 17779499-17780952,17781177-17782017 29 4.8
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 29 4.8
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 29 4.8
08_01_0876 - 8598664-8599374 28 6.4
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409... 28 6.4
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 28 6.4
12_02_0758 - 22858221-22858367,22859362-22859460,22859505-228595... 28 8.5
05_01_0213 - 1606383-1606816,1607695-1608355 28 8.5
>10_01_0105 + 1287423-1289924
Length = 833
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 500 FRQPLRCALVIRVNVEDGQTPGQVCERESRTQVEI 396
FR P L+I N GQ PG +CE E+ +++
Sbjct: 447 FRAPNLENLIISSNYITGQVPGSICESENMKHLDL 481
>06_03_1282 -
28946363-28946533,28947234-28947272,28947399-28947566,
28947605-28947697,28948135-28948215,28948409-28948499,
28948657-28948728,28948803-28948903,28949283-28949381,
28949631-28949954
Length = 412
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 625 WRKVAQWWQPKSQ-SVLLMKDLASQFLFPKMCSL 527
WRK AQW+ K Q +VL++ D F + C L
Sbjct: 224 WRKGAQWFTVKRQHAVLILSDFLYYAKFKRYCKL 257
>03_05_0447 - 24421442-24422767
Length = 441
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 568 DLASQFLFPKMCSLS*MCSRVRSLDNHCAVRWSLGLMWKMGRPPARSANVKAEHKSKLLP 389
D A + + C+ + VRS+D A+ + G + MG PA +A H + P
Sbjct: 211 DFALRDVCAATCAAGSTAAAVRSVDGRTAIAAASGGVAAMGN-PAAAAITHVLHNKQEFP 269
Query: 388 LSNTVVSLI 362
L+ TV ++
Sbjct: 270 LATTVDDIL 278
>10_08_0418 - 17779499-17780952,17781177-17782017
Length = 764
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 511 CCTFTRESTSSERGTGWRGPSSAEHSATSVATTERLFSNIIFYF 642
C F ++ + R T + P+ A+H+ + T +F N +FYF
Sbjct: 203 CEVFVLDAPAYWRPTAQQPPAPADHNVKVMVTDPPVFLNGLFYF 246
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 550 GTGWRGPSSAEHSATSVATTERLFSNIIFYFANTFRHMA 666
G W+G S+ + V R + +IF+++N+F MA
Sbjct: 610 GGVWQGNSNGHAAGDPVMHDNRRYRYLIFFYSNSFSFMA 648
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 187 RVMRLWSM*VALKYGISNWNTGISYCE 107
R R W++ AL GISNW+ I+ E
Sbjct: 409 RFTRAWTLPRALSSGISNWSNAINLAE 435
>08_01_0876 - 8598664-8599374
Length = 236
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Frame = +1
Query: 16 STGPASWTITNASPT---TWPRTRNVSRAEGRSPR----STRYRC 129
++GP WT+ A+P T P++R R RSPR + R RC
Sbjct: 152 ASGPRRWTMDGAAPLLPETSPKSRRGRRGGRRSPRRGPRTRRRRC 196
>03_05_0510 +
25039408-25039455,25040627-25040641,25040832-25040991,
25041116-25041192,25041324-25042528,25042537-25042621,
25043068-25043130,25043207-25043263,25043299-25043361,
25043560-25043643,25043730-25044320,25044535-25044663
Length = 858
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 503 SDPAAHLRERAHLRKEELAGEVLHQQNTLRLRLPPLSDFS 622
S+ AA + R + +EELAG+V+H Q++ L P L DFS
Sbjct: 143 SNHAARILRR-RVAEEELAGDVMH-QDSFWLVKPCLYDFS 180
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 159 TYIDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESN 287
TY+ +I NH R+ EF + L ++C W+ N
Sbjct: 139 TYVIPGIINYNHS--RIDEFIKKAQDLLDPTVLECAWMELSEN 179
>12_02_0758 -
22858221-22858367,22859362-22859460,22859505-22859557,
22859674-22859728,22860204-22860284,22860779-22861213
Length = 289
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 367 G*RQCLIRATISTCVRLSRSQTW-PGVCPSSTLTLMTNAQRSGCLKI*PC 513
G R L ATIS+ LSR +TW P + +T + + N+ R CL+ C
Sbjct: 93 GGRTSLPCATISSPQALSRKETWTPYLLAVATNSSIGNSTRHICLRRFAC 142
>05_01_0213 - 1606383-1606816,1607695-1608355
Length = 364
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 611 SVVATEVAECSADE-GPRQPVPLSEDVLSLVNVQQGQIFRQP 489
+ T + CS++E GP P P SE++ N Q + QP
Sbjct: 197 TTTTTTTSSCSSEEVGPSSPSPTSEEIRLANNQQSSRRKLQP 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,959,335
Number of Sequences: 37544
Number of extensions: 464054
Number of successful extensions: 1230
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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