Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30679
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44234| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)               30   1.6  
SB_29977| Best HMM Match : IL8 (HMM E-Value=1)                         29   2.8  
SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_44234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 351 SYPLIRLTTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRT 482
           S+    +  +F    NF   +   F DL+  LPIFHI  ND+ T
Sbjct: 162 SHTATLIDNMFCNRPNFSQIADILFNDLSDHLPIFHICTNDENT 205


>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
          Length = 464

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +3

Query: 225 NVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYPLIRLTTVFDKGNNFD 404
           NV TL+++ T    W N       A   SFKE +VL  Y  G YP   +    ++ NN  
Sbjct: 159 NVTTLRSLYTKS--WSNVPEQFIKAYSASFKETIVLCRY--GLYP-CNMKLFTEQVNNIG 213

Query: 405 LCSAF 419
            C +F
Sbjct: 214 RCFSF 218


>SB_29977| Best HMM Match : IL8 (HMM E-Value=1)
          Length = 521

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 472 SLGLMWKMGRPPARSANVKAEHKSKLL 392
           S+G +W+ G  PA  ++V  +H S++L
Sbjct: 152 SMGFLWRSGLKPAAQSSVSVQHISQIL 178


>SB_52407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 14  DLQALLLGRLQMHLRPPGRELEMYPGQRADPLAVRDTGVPV*NTILQRHLHR 169
           D+ A  + +  + LRPPGR     P +  D + V D+     N++ +R  HR
Sbjct: 42  DIVAKKMAKNLLRLRPPGRRQYAAPRRPTDVILVVDSS----NSLRRREFHR 89


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
 Frame = -3

Query: 601  QPKSQSVLLMKDLASQFLFPKMCSLS*MCSR--VRSLDNHCAVRWSLGLMWKM-GRPPAR 431
            +P+   VLL + +AS+ + P  C+   M  R   RS   HC  +WS G + ++   P  +
Sbjct: 1506 RPEDSRVLL-ETMASRCV-PGTCANKEMALRNPERSSRGHCCRKWSTGRVTEVYPGPDGK 1563

Query: 430  SANVKAEHKSKLLPLSNTVVSLIKG*DPLM*KLKTTSSLN 311
              NVK +  +     + T +++I+  D  + ++ +    N
Sbjct: 1564 VRNVKVQTATGKYSRTVTKIAVIQAADEELLQINSNRDRN 1603


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,895,465
Number of Sequences: 59808
Number of extensions: 529099
Number of successful extensions: 1750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1750
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)