Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30679
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    31   0.82 
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    31   0.82 
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    29   3.3  
AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical...    29   3.3  
Z82068-2|CAB04898.2|  233|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 570 RTSPASSSFRRCALSRKCAAGSDL*TTTALCVG 472
           +T  AS++F  C L+  C  GSDL +TT  C G
Sbjct: 866 QTCSASANFNTCPLNHWCHIGSDL-STTVCCPG 897


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 570  RTSPASSSFRRCALSRKCAAGSDL*TTTALCVG 472
            +T  AS++F  C L+  C  GSDL +TT  C G
Sbjct: 1284 QTCSASANFNTCPLNHWCHIGSDL-STTVCCPG 1315


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 15
            protein.
          Length = 1217

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = -2

Query: 581  SADEGPRQPVPLSEDVLSLVNVQQGQIFRQPLRCALVIRVNVEDGQTP 438
            S  +GP  P  + + ++++  +QQ  + +QPL+ +    ++++  QTP
Sbjct: 861  SMQQGPHNPQNIPDQMMNMQQMQQDPMSQQPLQESPQPNLHLQHHQTP 908


>AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.26 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 135 TGTPVSRTARGSALCPGYISSSRPGGRRCI 46
           + TP S+T+   A+C G  SSSR G   CI
Sbjct: 10  SSTPSSQTSELCAVCGGKASSSRYGALSCI 39


>Z82068-2|CAB04898.2|  233|Caenorhabditis elegans Hypothetical
           protein W04A4.4 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 189 NHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNR 290
           N+D+ RV EF    R  K +LTV  P +  ES +
Sbjct: 88  NNDENRVWEFIQENRNSKFILTVSTPTIEEESEK 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,645,334
Number of Sequences: 27780
Number of extensions: 394733
Number of successful extensions: 1117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)