Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30677
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    25   0.54 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    24   1.2  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   2.9  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.6  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 208 TSGAIIMVYREEGFRALYKGLLPKVLRLGPGGAIMLVVYDYV 83
           T+   IM    + FR   + L+P+ LRL  GG  + + Y  +
Sbjct: 94  TAAHKIMAGATKRFRNQIEALVPRKLRLADGGKTLEINYKLI 135


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/23 (30%), Positives = 18/23 (78%)
 Frame = -2

Query: 388 YHSVKGYVPEYQDPLSEFLRKVA 320
           Y S+K  +P+ ++ +++FLR+++
Sbjct: 90  YRSIKFNIPDEKNEVNDFLREIS 112


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 319 WRPSAETLITDPDTPVH 369
           W+PS    + DP TP H
Sbjct: 472 WKPSMHGGVCDPYTPWH 488


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 185 DHYDGAGRGTILDDARHRLRTL 250
           D Y+ AG G  ++D  H  RT+
Sbjct: 425 DSYNLAGMGETIEDLLHFCRTM 446


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 435 AVSPLFSPREP 467
           +VSPL SPR+P
Sbjct: 912 SVSPLTSPRQP 922


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,034
Number of Sequences: 336
Number of extensions: 3202
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)