Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30676
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676           29   5.0  
07_01_0963 + 8085918-8086225,8086335-8086461,8087134-8087688           28   8.7  

>06_01_1151 - 9727051-9729510,9733966-9734022,9735299-9735676
          Length = 964

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 542 MIITASFTALTF*SVSDFEGHTPVILRSDRDISN*IN 652
           +I+  +FT L    V DF G+T ++  + +++SN IN
Sbjct: 678 LILPGTFTKLYHMQVLDFIGNTDLVFSAGKEMSNLIN 714


>07_01_0963 + 8085918-8086225,8086335-8086461,8087134-8087688
          Length = 329

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 174 PVKQTTNIKNRWRA*NRSLCSRMRL 100
           P +    +KNRW A  RSL S+ RL
Sbjct: 176 PGRSENTVKNRWNATKRSLNSKRRL 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,380
Number of Sequences: 37544
Number of extensions: 288587
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)