Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30675
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 34 0.15
08_02_1430 - 27048055-27048408,27049674-27049841,27049927-270500... 32 0.45
10_08_0522 + 18512213-18512601,18513677-18513779,18513924-185139... 31 1.0
07_01_0686 - 5184061-5184267,5184655-5184762,5185405-5185578,518... 29 3.2
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572... 29 5.5
03_02_0243 - 6744164-6744415,6744518-6745135 29 5.5
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468 28 9.7
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 28 9.7
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 33.9 bits (74), Expect = 0.15
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 563 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 423
D +G G+YG N +V + +SLE I E+LN+ + F W
Sbjct: 24 DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70
>08_02_1430 -
27048055-27048408,27049674-27049841,27049927-27050042,
27050153-27050305,27050850-27050993,27051052-27051211,
27051332-27051970
Length = 577
Score = 32.3 bits (70), Expect = 0.45
Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 8/151 (5%)
Frame = +1
Query: 1 EALHFVGLKISDVKVDKMVTFFDHFDFDAFNTVYFSKEELKSSPH--GYKVRQPRLN--- 165
+AL V + +VDK V F H D D + S +EL H G V +P +
Sbjct: 401 KALGVVARNLPGEEVDKYVQMFHHMDKD--KNGHLSLDELLEGLHINGQPVPEPEIRMLL 458
Query: 166 ---HKPFTVTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPG 336
T+D V + +K +Y F + +D F ELD ++V P
Sbjct: 459 EAADTDGNGTLDCDEFVTVSVHLKKMSNDEYLAAAFNYFDKDG-SGFIELDELREEVGPN 517
Query: 337 QSQITRSSTDFAFFKEDSLPMAEIYKLLDQG 429
+ I D K+ + E ++ G
Sbjct: 518 EQAILEILRDVDTDKDGRISYQEFELMMKSG 548
>10_08_0522 +
18512213-18512601,18513677-18513779,18513924-18513975,
18514662-18514741,18514980-18515054,18515783-18515899,
18516427-18516471,18516991-18517089,18517327-18517347
Length = 326
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 653 TCSSRRSWSTMKENYSPIYLNIPHYTPE*SATIMLS*VKV 772
TC+S R S ++E Y+ Y+N H P S + L VKV
Sbjct: 183 TCASNRFSSELEEEYTITYINSDHRLPTASKDVDLRAVKV 222
>07_01_0686 -
5184061-5184267,5184655-5184762,5185405-5185578,
5185680-5185808,5185891-5186178,5186341-5186570,
5186619-5187516
Length = 677
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 189 NCHSERLVV-KTWLTDLVTVRRALEFFFTEVDGVEGIEVEMVKECDHFVD 43
N +ER+ V KTW++ + + FF + G + + VE+ KE + F D
Sbjct: 442 NHFAERMGVRKTWMSAVRNSPNVVARFFVALHGRKEVNVELKKEAEFFGD 491
>11_05_0063 -
18756289-18756390,18756769-18756954,18757053-18757223,
18757339-18757383,18758087-18758260,18758801-18758887,
18759349-18759510,18759945-18760015,18760296-18760435,
18760828-18760952,18761329-18761463,18762069-18762314,
18762530-18762755,18763039-18763091
Length = 640
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 523 FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 621
F +PYEPTP +++ F V D P DR
Sbjct: 79 FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111
>03_02_0243 - 6744164-6744415,6744518-6745135
Length = 289
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 225 DDGVSGNIRFNINCHSERLVV 163
D VSG+ RF++ C ERLVV
Sbjct: 87 DVRVSGSARFDVQCRGERLVV 107
>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
Length = 898
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/66 (33%), Positives = 28/66 (42%)
Frame = +1
Query: 478 LMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNM 657
+ LP G YD F +Q F Y + P PF S +P FDR Y
Sbjct: 150 VFLPAGLYDRF-YQHFCKGYLW-PLFHYMLPFASALPAAASGDGRFDRGAWEAYVLANKY 207
Query: 658 FFKKVL 675
FF+KV+
Sbjct: 208 FFEKVV 213
>03_01_0510 +
3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 587 GTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLG-SISLEGIVSEELNMSV 438
G TD+ G D G+ +G + +K S PLG ++ V+ LN+SV
Sbjct: 55 GDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSV 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,789,136
Number of Sequences: 37544
Number of extensions: 383253
Number of successful extensions: 1087
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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