Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30675
(787 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC096288-1|AAH96288.1| 436|Homo sapiens glial cells missing hom... 32 2.0
AL512347-2|CAI14905.1| 436|Homo sapiens glial cells missing hom... 32 2.0
AB047819-1|BAB18039.1| 436|Homo sapiens chorion-specific transc... 32 2.0
AB041714-1|BAA94757.1| 436|Homo sapiens chorion-specific transc... 32 2.0
AB026493-1|BAA77250.2| 436|Homo sapiens GCM motif protein protein. 32 2.0
D88613-1|BAA13651.1| 436|Homo sapiens hGCMa protein. 32 2.7
>BC096288-1|AAH96288.1| 436|Homo sapiens glial cells missing
homolog 1 (Drosophila) protein.
Length = 436
Score = 32.3 bits (70), Expect = 2.0
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Frame = +1
Query: 454 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 633
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 634 Q-----YFKQPNMFFKKVL---VYHEGELFPYLFKHSSLYTRIKRNYYALISKSKR 777
Y ++ ++ F + YH + P+LF ++S Y+L SKS +
Sbjct: 358 NPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYAS----HPHQQYSLPSKSSK 409
>AL512347-2|CAI14905.1| 436|Homo sapiens glial cells missing
homolog 1 (Drosophila) protein.
Length = 436
Score = 32.3 bits (70), Expect = 2.0
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Frame = +1
Query: 454 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 633
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 634 Q-----YFKQPNMFFKKVL---VYHEGELFPYLFKHSSLYTRIKRNYYALISKSKR 777
Y ++ ++ F + YH + P+LF ++S Y+L SKS +
Sbjct: 358 NPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYAS----HPHQQYSLPSKSSK 409
>AB047819-1|BAB18039.1| 436|Homo sapiens chorion-specific
transcription factor GCMa protein.
Length = 436
Score = 32.3 bits (70), Expect = 2.0
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Frame = +1
Query: 454 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 633
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 634 Q-----YFKQPNMFFKKVL---VYHEGELFPYLFKHSSLYTRIKRNYYALISKSKR 777
Y ++ ++ F + YH + P+LF ++S Y+L SKS +
Sbjct: 358 NPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYAS----HPHQQYSLPSKSSK 409
>AB041714-1|BAA94757.1| 436|Homo sapiens chorion-specific
transcription factor GCMa protein.
Length = 436
Score = 32.3 bits (70), Expect = 2.0
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Frame = +1
Query: 454 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 633
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 634 Q-----YFKQPNMFFKKVL---VYHEGELFPYLFKHSSLYTRIKRNYYALISKSKR 777
Y ++ ++ F + YH + P+LF ++S Y+L SKS +
Sbjct: 358 NPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYAS----HPHQQYSLPSKSSK 409
>AB026493-1|BAA77250.2| 436|Homo sapiens GCM motif protein protein.
Length = 436
Score = 32.3 bits (70), Expect = 2.0
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Frame = +1
Query: 454 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 633
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 634 Q-----YFKQPNMFFKKVL---VYHEGELFPYLFKHSSLYTRIKRNYYALISKSKR 777
Y ++ ++ F + YH + P+LF ++S Y+L SKS +
Sbjct: 358 NPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYAS----HPHQQYSLPSKSSK 409
>D88613-1|BAA13651.1| 436|Homo sapiens hGCMa protein.
Length = 436
Score = 31.9 bits (69), Expect = 2.7
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
Frame = +1
Query: 454 SSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLP 633
S + R L Y +PF L + + P+ SEPF +P P P+ P
Sbjct: 298 SKNAALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWP 357
Query: 634 Q-----YFKQPNMFFKKVL---VYHEGELFPYLFKHSSLYTRIKRNYYALISKSKR 777
Y ++ ++ F + YH + P+LF ++S Y+L SKS +
Sbjct: 358 NPAGNLYEEKVHVDFNSYVQSPAYHSPQGDPFLFTYAS----HPHQQYSLPSKSSK 409
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,887,139
Number of Sequences: 237096
Number of extensions: 2190876
Number of successful extensions: 4519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4519
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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