Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30674
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    28   1.5  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   3.4  
SPAC1610.02c |||mitochondrial ribosomal protein subunit L1|Schiz...    26   4.4  

>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/56 (32%), Positives = 34/56 (60%)
 Frame = +2

Query: 173 IINSSSTLQKRFSKIYLLSFFIF*IKLYKIPLITLSFCF*LSFFIPFGDNFIAIIT 340
           II S S+L K+   +++LSFF++   L +   + L+  F +SF +  G  F+A+++
Sbjct: 338 IIASFSSLLKKLLTLFVLSFFVY--PLVQEFCLFLACSFVVSFLL-HGSFFLAVLS 390


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 76  RKNIYK-HEC*HRKFNITTCNFRVYDKV 156
           R+++Y   +C H+ F I +CN +  D V
Sbjct: 11  RRSVYNLKKCLHKGFQINSCNIKAADNV 38


>SPAC1610.02c |||mitochondrial ribosomal protein subunit
           L1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 253

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 484 YIYLLNRHLNCFHRRAVMPSMSKRLHSESLTVPIALSYESSISL 615
           +I  LN+  N       +P  +K L S S++VP   SY  SI+L
Sbjct: 32  FISQLNKKSNFPALAMTVPEATKYLKSVSISVPYVGSYMLSIAL 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,883
Number of Sequences: 5004
Number of extensions: 45274
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)