Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30674
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)                 28   6.2  
SB_9249| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 243  KSNFIRFL*SHYPFVFNYHSLFLSETILLQSLQNSVKREPAXIQDVFIQSQFIRIFLLVA 422
            K   IRF      +VF +    +   + + +  ++    P  +  +++Q+ F  +  LV 
Sbjct: 892  KMRSIRFYVRTLLYVFKWMYDSMPPFLRVVTCSSTADCYPPALTMLYLQTAFYAVAALVN 951

Query: 423  QFNLPECW 446
             F +PECW
Sbjct: 952  AFRIPECW 959


>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
          Length = 1383

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 282 FVFNYHSLFLSETILLQSLQNSVKREPAXIQDVFIQSQFIRIFLLVAQFNLP 437
           F F+ H+LFLSE  L Q++ +          + F Q   + ++L V     P
Sbjct: 631 FYFDIHALFLSENSLYQAVFDMATYVKTPYSNAFYQLGTLEVWLQVIHSQAP 682


>SB_9249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 550 KRLHSESLTVPIALSYESSISLINAIPIQYWAYP*TAYTIKITNE 684
           KR  + S   P++    SSI +I A+ +Q +    T Y +KI  +
Sbjct: 78  KRAAAPSEATPVSKGCRSSIEVIEAVEVQKYLPGITEYRVKIAKK 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,307
Number of Sequences: 59808
Number of extensions: 294890
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)