Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30669
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    28   1.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   1.7  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   5.2  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   5.2  
SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    25   6.8  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   9.0  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   9.0  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   9.0  

>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 66  ALAVGVNALTEEQKAEITKSSLPLIAECSKEFSVNQGDIDAAKKLGD 206
           A   G N +T   KA I + +  L  EC+KE +    DI+  +++ D
Sbjct: 200 ARQTGKNNITVVHKATIMRMADGLFLECAKELAPEYPDIELREEILD 246


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 302  EEQEISYQRGGLESLRETNGDVRSRK 379
            EE+++   +G LESLRE N  V S K
Sbjct: 948  EEKDLLDTKGELESLRENNATVLSEK 973


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 244 MKHPTKQEFKPLGSPSFLAASMSP*FTLNSLEHSAIRGNDD 122
           +KHPTK + KP+      A ++ P  ++  ++H  +R  DD
Sbjct: 176 LKHPTKPDLKPVS-----AWNLLPNTSMAGIQHLMLRVADD 211


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 354 LTEMCAPENDKPVSDSDKGCERAKLLLDCFVANK 455
           L EM +P  ++P S+  + CE   +LLD  + N+
Sbjct: 244 LVEMLSPLYERPNSNPFEVCELNAILLDAKIQNQ 277


>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +1

Query: 367 ALQKMTNQ-SVTVTRAAKEQNFSSTVSLQTKE 459
           A+Q+ +N+ S+TV  A K ++FSS+V+ Q  E
Sbjct: 97  AVQQPSNELSITVPEAYKLEDFSSSVANQLLE 128


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 477 VRRPRNFLCLQRNSRGEVLLFRS 409
           VR+P +F+C   N RG  L + +
Sbjct: 354 VRKPSSFICTISNDRGSELTYNN 376


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 217 KPLGSPSFLAASMSP*FTLNSLEHSAIRGNDD 122
           KP    SF A+ M+P  +L S  +SAI G +D
Sbjct: 477 KPSVLASFNASIMNPKSSLPSFSNSAILGTND 508


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 257 NHQRKWSFRCSRYY*EEQEISYQRGGL 337
           +H R   +R SR Y   QEISY  G L
Sbjct: 240 SHPRGIHWRDSRSYLLSQEISYSNGNL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,819
Number of Sequences: 5004
Number of extensions: 42920
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)