Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30669
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.0  
SB_8817| Best HMM Match : I-set (HMM E-Value=0)                        29   2.4  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_33834| Best HMM Match : PAN (HMM E-Value=0.00029)                   28   7.2  

>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1748

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -2

Query: 293 SGYIEKTTCVDDSSFLHETSYKARVQTARVTKFLSRVNVALIHAELFG 150
           + YI++     +  +  ++ YKA+ +   + +FLSR N+AL  A+ FG
Sbjct: 562 ASYIDQLERSQNLQYQGKSLYKAKNKQRTLKEFLSRANLALWFAKAFG 609


>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2526

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 7/111 (6%)
 Frame = +3

Query: 126  SLPLIAECSKEFSVNQGDIDA--AKKLGDPSGLNSCFVGCFMKKAGIINASGLFDVAATI 299
            SLP+I E  K+   N+GD+     +  G P  +   F     K   +++ SG F +   +
Sbjct: 2203 SLPVIKEGLKDTEANEGDVVRFDIRVAGKPEPVVEWF-----KNDELLDDSGKFIIIDDV 2257

Query: 300  EKSKKYLTSEEDLKAFEKLTEMCAPENDK-----PVSDSDKGCERAKLLLD 437
            +        ++D + F  + E CAPE+D       ++++ K   + KLL++
Sbjct: 2258 D--------DKDKELFSLVIEGCAPEDDAVYSVVAMNEAGKDSSKGKLLVN 2300


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 15  VQHVKMSANSFVVLAFCALAVGVNALTEEQKAEITK 122
           + H  ++ N+ +V+A   +   VNA  ++ KAEI K
Sbjct: 52  LHHASLTGNTEIVMALLDMQCNVNARDKKGKAEIAK 87


>SB_33834| Best HMM Match : PAN (HMM E-Value=0.00029)
          Length = 198

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 322 VRYFLLFSIVAATSKRPLALMIPAFFMKHPTK 227
           +RY ++  I+  TSKR  AL I  +F + P K
Sbjct: 156 IRYKIISQILKETSKRNTALKILKYFSQFPLK 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,224,358
Number of Sequences: 59808
Number of extensions: 313880
Number of successful extensions: 845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)