Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30669
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-5|AAY55870.1|  124|Caenorhabditis elegans Hypothetical ...    33   0.17 
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       30   1.2  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    30   1.2  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    30   1.2  
AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z75526-7|CAE17729.1|  325|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF016669-5|AAY55870.1|  124|Caenorhabditis elegans Hypothetical
           protein K10G6.5 protein.
          Length = 124

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = -2

Query: 404 VTVTDWFVIFWSAHLR*FLEGFQVLLAGKIFLALLNSSGYIEKTTCVDDSSFLHETSYKA 225
           +  T W+ + W+  L  F+  FQ++ A + FLALL  SG I+    +  S  L  T +KA
Sbjct: 55  IETTSWYPVVWTCWLHMFILYFQIMGACE-FLALL--SGLIDCLMVLPLSIILSRTDFKA 111


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 321  TSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLD 437
            T E+++ A E+  E+   E D    D D+GCE  + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
            protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 321  TSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLD 437
            T E+++ A E+  E+   E D    D D+GCE  + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform a
            protein.
          Length = 1475

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 321  TSEEDLKAFEKLTEMCAPENDKPVSDSDKGCERAKLLLD 437
            T E+++ A E+  E+   E D    D D+GCE  + +LD
Sbjct: 1225 TLEQNMNALEECFELGVDEYDFDEHDGDEGCELVQDMLD 1263


>AF047662-5|AAC04440.1|  385|Caenorhabditis elegans Hypothetical
           protein T22B2.3 protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 579 LNSEFYFYSTNAIKK*LLRYYQVIIETSQALFFKVRRPRNFLC 451
           L   FY +  N IK  LL  + +I+ + Q LFF  +    FLC
Sbjct: 278 LTDSFYPFLKNIIKFFLLSVFCLILFSMQTLFFPNQNHEFFLC 320


>Z75526-7|CAE17729.1|  325|Caenorhabditis elegans Hypothetical
           protein C06H2.7 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 108 AEITKSSLPLIAECSKEFSVNQGDI 182
           A +T +SLPLI EC  E+  ++ +I
Sbjct: 239 ASVTAASLPLIVECINEWRASRREI 263


>U41550-1|AAA83284.1| 1057|Caenorhabditis elegans Hypothetical
           protein R04A9.2 protein.
          Length = 1057

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +3

Query: 78  GVNALTEEQKAEITKSSLPLIAEC--SKEFSVNQGDIDAAK--KLGDPSGLNSCFVGCFM 245
           G NALT E ++E+T+    +  +C  +++F +        K   +  P  +     G F+
Sbjct: 244 GPNALTLENRSELTRIIEAITDQCLHNEKFLLYSSGTFPTKGGDIASPDEVTLIKSG-FV 302

Query: 246 KKAGIINASGLFDVAATIEKSKKYLTSEEDLKAF 347
           K   I++  G+ D   T++ +K     +  L  F
Sbjct: 303 KTTKIVDRDGVPDAIMTVDTTKSPFYKDTSLLKF 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,608
Number of Sequences: 27780
Number of extensions: 245279
Number of successful extensions: 693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)