Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30669
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40530.2 68418.m04918 expressed protein contains Pfam profile...    28   5.9  
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    28   5.9  
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    28   5.9  
At3g21250.1 68416.m02685 ABC transporter family protein similar ...    27   7.8  

>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 301

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 15  VQHVKMSANSFVVLAFCALAVGVN--ALTEEQKAEITKSSLPLIAECSKEFSVNQGDID 185
           + +  + ++S  V  FC   +G N  +  +E    +  S + LIAE    F  N G  D
Sbjct: 173 MSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGAD 231


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +3

Query: 15  VQHVKMSANSFVVLAFCALAVGVN--ALTEEQKAEITKSSLPLIAECSKEFSVNQGDID 185
           + +  + ++S  V  FC   +G N  +  +E    +  S + LIAE    F  N G  D
Sbjct: 173 MSNTSLESSSVDVAVFCLSLMGTNYSSYIKEAHRVLRPSGMLLIAEVKSRFDPNNGGAD 231


>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
 Frame = +3

Query: 147 CSKEFSVNQGDIDAAKKLGDPSGLNSC-FVGCFMKKAGIINASGLFDVAATIEKS----- 308
           C K FS++  ++ +  K       + C + GC  + A          VAA  EK+     
Sbjct: 145 CGKAFSLDF-NLRSHMKTHSQENYHICPYSGCVKRYAHEYKLKN--HVAAYHEKNGGGET 201

Query: 309 KKYLT-SEEDLKAFEKLTEMCAPENDKPVSDSDKGCERA 422
            KY   +E+ L+  +    +C P +D+P +   +GCE+A
Sbjct: 202 PKYTPPAEKVLRTVKTPATVCGPSSDRPYACPYEGCEKA 240


>At3g21250.1 68416.m02685 ABC transporter family protein similar to
           MRP-like ABC transporter GB:AAC49791 from [Arabidopsis
           thaliana]
          Length = 1294

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 228 FVGCFMKKAGIINASGLFDVAATI 299
           F+GC + K+  +NAS +F V AT+
Sbjct: 363 FLGCALLKSAPLNASTIFTVLATL 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,012,860
Number of Sequences: 28952
Number of extensions: 221707
Number of successful extensions: 607
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)