Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30667
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    30   0.36 
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    29   0.83 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    28   1.1  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    27   2.5  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   2.5  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   4.4  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    26   4.4  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   5.8  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 312 TIAVNVSPEKTAQIRNVQAKMKSFPTARTHVRRVLAIHSSLVLN-SKPKPCEEGCTCKPD 488
           +IA +++P KT++I    A +K+      HV++  A H   +LN S   P +      PD
Sbjct: 541 SIAGSLTPSKTSRIYRGLAPLKNPEFNEDHVKK--AEHLEPLLNVSSSVPSKNFTVSSPD 598

Query: 489 YLKLDDNSA 515
           +LK  + S+
Sbjct: 599 HLKYGNTSS 607


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 44  MPYPLVRQEYCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVKCVQAQC 208
           + +P + +  C   CV         +G C+ +E CP  DL  + E  V  ++ +C
Sbjct: 182 LDHPNILKVICP--CVTLTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKC 234


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +3

Query: 138 EKTAQILTSALKMKYT*N---VSKHSAAQ*RAQRRTYLCPAHW*GESTAKPDACVNRDI* 308
           E T +I + A   KY  +   V+K  + + ++  ++      W G++T+KP A  N    
Sbjct: 64  ESTGKITSEADTEKYNSSKSPVNKEGSVEKKSSEKSSTNNKPWRGDNTSKPSA--NSSAE 121

Query: 309 KTIAVNVSPEKTAQI 353
           +T + +  PE ++QI
Sbjct: 122 RTSSQHQKPETSSQI 136


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 456 PCEEGCTCKPDYLKLDDNSACV 521
           P +  C CKP+ + L  NS+C+
Sbjct: 337 PRKGRCFCKPEEIDLSSNSSCI 358


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 425 VNCKYAADMGSCSWKTLHFRLN 360
           VN  Y  D+ +CSWK + ++ N
Sbjct: 58  VNDMYVVDLNTCSWKQVEYQGN 79


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 312 TIAVNVSPEKTAQIRNVQAKMKS 380
           TIA  + P  T Q+R ++AKMK+
Sbjct: 388 TIAGRMKPADTEQVRKLKAKMKA 410


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 519 HRPNCRRVSSNLVC 478
           H P+CRRV +++VC
Sbjct: 84  HNPSCRRVPNSIVC 97


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 236 SPSLSTSLGRTVLGHISRIF 177
           S SLS +LG TVLG++S  F
Sbjct: 131 SESLSLALGMTVLGYLSLAF 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,364
Number of Sequences: 5004
Number of extensions: 60108
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)