Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30667
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    36   3e-04
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    36   3e-04
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.6  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +2

Query: 164 CSENEIYVKCVQAQCGPMTCSEKDLPMPCPLVRREYCKARCVCKQGYLKDDSGKCVAREN 343
           C  NEI+ +C   +C    C      +P PL  +  C   CVC+ GYL++    CV R  
Sbjct: 37  CPSNEIFSRC-DGRCQRF-CPNV---VPKPLCIK-ICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 344 C 346
           C
Sbjct: 91  C 91



 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 41  LMPYPLVRQEYCKAGCVCKEGYLKDDSGKCVARENC 148
           ++P PL  +  C  GCVC+ GYL++    CV R  C
Sbjct: 57  VVPKPLCIK-ICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 453 KPCEEGCTCKPDYLKLDDNSACVKICEC 536
           K C  GC C+  YL+ +    CV   +C
Sbjct: 65  KICAPGCVCRLGYLR-NKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +2

Query: 164 CSENEIYVKCVQAQCGPMTCSEKDLPMPCPLVRREYCKARCVCKQGYLKDDSGKCVAREN 343
           C  NEI+ +C   +C    C      +P PL  +  C   CVC+ GYL++    CV R  
Sbjct: 37  CPSNEIFSRC-DGRCQRF-CPNV---VPKPLCIK-ICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 344 C 346
           C
Sbjct: 91  C 91



 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 41  LMPYPLVRQEYCKAGCVCKEGYLKDDSGKCVARENC 148
           ++P PL  +  C  GCVC+ GYL++    CV R  C
Sbjct: 57  VVPKPLCIK-ICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 453 KPCEEGCTCKPDYLKLDDNSACVKICEC 536
           K C  GC C+  YL+ +    CV   +C
Sbjct: 65  KICAPGCVCRLGYLR-NKKKVCVPRSKC 91


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 359 CSGENEEFSNCTNPCPP 409
           CS E  E S  +NPC P
Sbjct: 93  CSAEKFECSKTSNPCLP 109


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 468 GCTCKPDYLKLDDNSACVKICECP 539
           GC CKP Y    +   C    ECP
Sbjct: 246 GCHCKPGYQADVEKQECT---ECP 266


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = -2

Query: 266 LASPMGRA*VSPSLSTSLGRTVL-GHISRIFHFQSRGQNLGSFLGRHIYRYRLSDIPLYI 90
           LAS       + + +TS G  +L G +S+  H Q  G  + +  GRH+  +     P Y 
Sbjct: 169 LASVKAEPGSTGTTTTSTGTRLLHGILSQ--HPQQHGLGVQNGYGRHLPGHAQMGRPSYT 226

Query: 89  RIRLCSTLASPMGRA*VSPCTEHV 18
              + +T     G    SP    V
Sbjct: 227 TATMATTSTPGSGSLPASPADSGV 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,358
Number of Sequences: 438
Number of extensions: 4175
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)