Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30667
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07610.1 68414.m00815 metallothionein-like protein 1C (MT-1C)...    30   1.2  
At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)...    30   1.2  
At1g55420.1 68414.m06339 DC1 domain-containing protein contains ...    29   2.9  
At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to c...    29   3.8  
At5g38140.1 68418.m04596 histone-like transcription factor (CBF/...    28   5.0  
At5g16760.1 68418.m01962 inositol 1,3,4-trisphosphate 5/6-kinase...    28   5.0  
At1g78800.1 68414.m09184 glycosyl transferase family 1 protein c...    28   5.0  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   6.6  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   6.6  
At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,...    27   8.8  

>At1g07610.1 68414.m00815 metallothionein-like protein 1C (MT-1C)
           identical to Metallothionein-like protein 1C (MT-1C).
           (SP:Q38804) (Arabidopsis thaliana)
          Length = 45

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 459 CEEGCTCKPDYLKLDDNSACVKICEC 536
           C + C+C+ +Y K  DN +C   C C
Sbjct: 14  CGDSCSCEKNYNKECDNCSCGSNCSC 39


>At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)
           (MT-Q) (MT-2) identical to Metallothionein-like protein
           1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis
           thaliana)
          Length = 45

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 459 CEEGCTCKPDYLKLDDNSACVKICEC 536
           C + C+C+ +Y K  DN +C   C C
Sbjct: 14  CGDSCSCEKNYNKECDNCSCGSNCSC 39


>At1g55420.1 68414.m06339 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 725

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 516 RPNCRRVSSNLVCKCIPLRRVWAYYLIRAMSELQV-RGGHGFVQLENSSFSPEH 358
           RP+   +S    CK   LR   AYY   A   L+  RG H F+ +  SSF P H
Sbjct: 31  RPSYPPLSICFTCKGKQLRSS-AYYYYCATCNLEFHRGCHIFLPVIRSSFHPSH 83


>At5g25380.1 68418.m03010 cyclin 3a (CYC3a) nearly identical to
           cyclin 3a [Arabidopsis thaliana] GI:509425; contains
           Pfam profiles PF00134: Cyclin, N-terminal domain,
           PF02984: Cyclin, C-terminal domain
          Length = 437

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 380 TLHFRLNIPNLGSFLGRHIYRYRLSD-IPVYTRIWLCSTLA 261
           +LHFRL++P   +FL R I   + SD +P+    +L +  A
Sbjct: 297 SLHFRLSVPTTKTFLRRFIRAAQASDKVPLIEMEYLANYFA 337


>At5g38140.1 68418.m04596 histone-like transcription factor
           (CBF/NF-Y) family protein similar to CCAAT-binding
           transcription factor subunit AAB-1 (GI:2583171)
           [Neurospora crassa];  contains a CBF/NF-Y subunit
           signature (PDOC00578) presernt in members of
           histone-like transcription factor family; contains Pfam
           PF00808 : Histone-like transcription factor (CBF/NF-Y)
           and archaeal histone
          Length = 195

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 180 ISFSEQRSEFGQFSRATHLPLSSFR 106
           + ++ QR + G F+  THLPLS  R
Sbjct: 50  VFWNNQREQLGNFAGQTHLPLSRVR 74


>At5g16760.1 68418.m01962 inositol 1,3,4-trisphosphate 5/6-kinase
           identical to inositol 1,3,4-trisphosphate 5/6-kinase
           GI:3396079 from [Arabidopsis thaliana]
          Length = 319

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 41  LMPYPLVRQEYCKAGCVCKEGYLKDDSGKCVARENCPN 154
           ++  P+V QE+   G V  + Y+  D  KCV R + P+
Sbjct: 169 ILKAPIVLQEFVNHGGVIFKVYVVGDHVKCVKRRSLPD 206


>At1g78800.1 68414.m09184 glycosyl transferase family 1 protein
           contains similarity to glycosyltransferase GI:871530
           from [Saccharomyces cerevisiae], Alg2
           mannosyltransferase [gi:3868942] from Rhizomucor
           pusillus; contains Pfam profile: PF00534 Glycosyl
           transferases group 1
          Length = 403

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 404 DMGSCSWKTLHFRLNIPNLGSFLGRHIYRYRLSDIPVYTR 285
           D   C  +TL     +   GSFL RHI+ YRL  +  Y R
Sbjct: 49  DKSRCFEETLSGIFQVTVYGSFLPRHIF-YRLHAVCAYLR 87


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 263 ASPMGRA*VSPSLSTSLGRTVLGHISRIFHFQSRG 159
           A P+GR  V   +S+       G + ++FHF+ RG
Sbjct: 394 AQPVGRNRVPSQVSSQPDLLEFGQLQQLFHFRDRG 428


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 263 ASPMGRA*VSPSLSTSLGRTVLGHISRIFHFQSRG 159
           A P+GR  V   +S+       G + ++FHF+ RG
Sbjct: 394 AQPVGRNRVPSQVSSQPDLLEFGQLQQLFHFRDRG 428


>At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,
           putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
           transcription complex, subunit 8 (CAF1-like protein,
           CALIFp) [Homo sapiens]
          Length = 360

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 150 GQFSRATHLPLSSFRYPSLHTHPALQY 70
           G + + THLP S+F YPS      + Y
Sbjct: 317 GTYVQLTHLPASTFAYPSQTPSATVDY 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,191
Number of Sequences: 28952
Number of extensions: 327162
Number of successful extensions: 839
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)