Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30664
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13950.1 68414.m01639 eukaryotic translation initiation facto...   191   5e-49
At1g69410.1 68414.m07972 eukaryotic translation initiation facto...   185   3e-47
At1g26630.1 68414.m03243 eukaryotic translation initiation facto...   182   3e-46
At3g06450.1 68416.m00746 anion exchange family protein similar t...    31   1.1  
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica...    29   2.6  
At1g56345.1 68414.m06477 pseudouridine synthase family protein l...    29   2.6  
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ...    29   3.5  
At3g05830.1 68416.m00654 expressed protein                             29   4.6  
At3g12240.1 68416.m01527 serine carboxypeptidase S10 family prot...    28   6.0  
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea...    28   8.0  
At3g06490.1 68416.m00753 myb family transcription factor (MYB108...    28   8.0  

>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
           5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Arabidopsis thaliana}
          Length = 158

 Score =  191 bits (465), Expect = 5e-49
 Identities = 83/148 (56%), Positives = 112/148 (75%), Gaps = 1/148 (0%)
 Frame = +3

Query: 57  HTLRDRNSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIF 236
           H     ++GAS T+P Q   +RKNG++++K RPCK+VE+STSKTGKHGHAK H V IDIF
Sbjct: 6   HHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIF 65

Query: 237 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD-LGTQ 413
             KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG  ++DLK+P+ D L  Q
Sbjct: 66  TSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPNDDTLLQQ 125

Query: 414 LRTDFDSGKELLCTVLKSCGEECVIAVK 497
           +++ FD GK+L+ +V+ + GEE + A+K
Sbjct: 126 IKSGFDDGKDLVVSVMSAMGEEQINALK 153


>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similarity to
           eukaryotic initiation factor 5A (2) (Nicotiana
           plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
           translation initiation factor 5A-1 (eIF-5A 1)
           {Lycopersicon esculentum}
          Length = 158

 Score =  185 bits (451), Expect = 3e-47
 Identities = 82/148 (55%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
 Frame = +3

Query: 57  HTLRDRNSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIF 236
           H     ++GAS T+P Q   +RK G +++KGRPCK+VE+STSKTGKHGHAK H V IDIF
Sbjct: 6   HHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIF 65

Query: 237 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQ 413
             KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG  ++DLK+P D  L TQ
Sbjct: 66  TSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQ 125

Query: 414 LRTDFDSGKELLCTVLKSCGEECVIAVK 497
           L+  F+ GK+++ +V+ + GEE + A+K
Sbjct: 126 LKNGFEEGKDIVVSVMSAMGEEQMCALK 153


>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
           5A, putative / eIF-5A, putative strong similariy to
           SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
           (eIF-5A 1) {Lycopersicon esculentum}
          Length = 159

 Score =  182 bits (442), Expect = 3e-46
 Identities = 81/148 (54%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
 Frame = +3

Query: 57  HTLRDRNSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIF 236
           H      SGAS T+P     +RK G +++K RPCK+VE+STSKTGKHGHAK H V IDIF
Sbjct: 6   HHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIF 65

Query: 237 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQ 413
             KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G  ++DLK+P D  L  Q
Sbjct: 66  TAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQ 125

Query: 414 LRTDFDSGKELLCTVLKSCGEECVIAVK 497
           +R  FD GK+++ +V+ S GEE + AVK
Sbjct: 126 MRLGFDEGKDIVVSVMSSMGEEQICAVK 153


>At3g06450.1 68416.m00746 anion exchange family protein similar to
           putative Anion exchanger family members: GB:AAD39673,
           GB:AAD55295 [Arabidopsis thaliana]
          Length = 732

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 655 LRAPPLYYYSFFKLNLYTILC 593
           LR PP Y+Y  F L   TILC
Sbjct: 328 LRKPPAYHYDLFLLGFLTILC 348


>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
           to floral homeotic protein HUA1 [Arabidopsis thaliana]
           gi|16797661|gb|AAK01470
          Length = 524

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 29  KTQQWVTSKTHTSRPELRGLSHLP 100
           +T+ W T+   T RP+L   SHLP
Sbjct: 146 QTEAWYTTDYFTKRPKLESTSHLP 169


>At1g56345.1 68414.m06477 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 322

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -2

Query: 461 QHGAQQFLAAVEVSTQLCAEVTIRDFEVLTQVTIV-SHQGQVAIIRDISQLVVFALHVGY 285
           +HGA +  AA++V   L     +RD E   +V  V S + +   + D++ ++V     G 
Sbjct: 176 KHGAWRVYAALDVGRVLPGGSFVRDMETTFEVVSVNSVKNESCELEDVNHVIVAE---GE 232

Query: 284 VHVVCGGTD 258
             + CGG D
Sbjct: 233 RELSCGGDD 241


>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 591

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +3

Query: 381 LKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 482
           L IPDGD  T L      G   +C  L SCG  C
Sbjct: 412 LDIPDGDGYTPLMLAAREGHGHMCEYLISCGANC 445


>At3g05830.1 68416.m00654 expressed protein
          Length = 336

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +3

Query: 204 AKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDL 383
           AK  + G+D    K  ED+ P         V+ +D ++T + D+  + LM  +G  +   
Sbjct: 186 AKAGIGGMDSELQKLLEDVSPMKFERMNRLVEVKDEEITKLKDE--IRLM--SGQWKHKT 241

Query: 384 KIPDGDLGTQLRTDFDSGKELL 449
           K  +  L  Q RTD D  K++L
Sbjct: 242 KELESQLEKQRRTDQDLKKKVL 263


>At3g12240.1 68416.m01527 serine carboxypeptidase S10 family protein
           contains Pfam profile: PF00450 serine carboxypeptidase;
           similar to serine carboxypeptidase I precursor
           (SP:P37890) [Oryza sativa]
          Length = 436

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -2

Query: 368 VTIVSHQGQVAIIRDISQL---VVFALHVGYVHVVCGGTD-IFILFTIEDINPNQVNFSV 201
           + ++ H    +IIR +      + F L  GY+ V     D +F  F   + NP +    V
Sbjct: 16  LVLIQHADSSSIIRYLPGFEGPLPFELETGYIGVGQKEEDQLFYYFIKSENNPEEDPLLV 75

Query: 200 AVLSGFGCGHFNNLAW 153
            +  G GC  F+ L +
Sbjct: 76  WLTGGPGCSSFSGLVY 91


>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           GTP-binding protein beta chain homolog, Nicotiana
           tabacum, PIR:T16970
          Length = 438

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 509 SCVCFDGDDALLTAGFQHGA 450
           +C+ F GDD+LL +G Q G+
Sbjct: 124 TCLVFSGDDSLLVSGSQDGS 143


>At3g06490.1 68416.m00753 myb family transcription factor (MYB108)
           identical to transcription factor MYB108 GI:15375290
           from [Arabidopsis thaliana]
          Length = 323

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 154 HARLLKCPHPKPESTATLKFTWLGLISSMVKSMKIS--VPPHTTWTYPT*SAKTTN 315
           HA+ LKC     +   T+K+ W+  +   ++S   S      TT T  T SA T++
Sbjct: 122 HAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSS 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,848,124
Number of Sequences: 28952
Number of extensions: 372206
Number of successful extensions: 1031
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)