Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30662
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    29   0.62 
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   7.6  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   7.6  

>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 139 DRHSPDHRIHDHHSPD 92
           D H+ DH  HDHHS D
Sbjct: 23  DHHNHDHHGHDHHSHD 38



 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 133 HSPDHRIHDHHSPDRY 86
           H  DH  HDHH  D +
Sbjct: 20  HDYDHHNHDHHGHDHH 35


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 315 YIELLQILYKSCDESKNLPVA 253
           YI   Q  Y  CD  KNL VA
Sbjct: 190 YISFFQAFYVRCDSVKNLKVA 210


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 447 LLTSKYTLYRPDNGKLY 497
           L  S+Y   R DNGKLY
Sbjct: 45  LANSRYATVREDNGKLY 61


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 353 MSQTDYYEHSCIYTLSYCK 297
           +S   YY + C+   SYCK
Sbjct: 458 LSSLQYYAYECVIKPSYCK 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,681
Number of Sequences: 5004
Number of extensions: 26454
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)