Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30662
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0022 + 10290033-10290407,10290497-10290848,10290923-102910...    29   3.4  
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482...    28   5.9  
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991     27   7.7  

>01_02_0022 +
           10290033-10290407,10290497-10290848,10290923-10291070,
           10291145-10291225,10291651-10291822,10292120-10292158,
           10292384-10292543,10292676-10292779,10292979-10293278
          Length = 576

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 61  SPSCILDSTIRSGCSQRRRR 2
           SP CILDS ++  C++R RR
Sbjct: 192 SPLCILDSLVKFDCAERFRR 211


>02_05_0077 +
           25645730-25645993,25647172-25647648,25648027-25648237,
           25648407-25648564,25648641-25648711,25648829-25648934,
           25649008-25649094,25649701-25650252,25650337-25650403,
           25650971-25651104,25651175-25651228,25651376-25651472,
           25652007-25652212,25652287-25652367,25652543-25652608,
           25653025-25653098,25653766-25653871
          Length = 936

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 133 HSPDHRIHDHHSPDRY 86
           HS DHR+  +H+P RY
Sbjct: 645 HSEDHRVLQNHAPSRY 660


>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
          Length = 276

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 139 DRHSPDHRI-HDHHSPDR-YGILRTSRRSPS 53
           D HS DHR  H HH P   Y      RR+PS
Sbjct: 125 DHHSSDHRHGHGHHPPHAGYNCGGGGRRAPS 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,956,645
Number of Sequences: 37544
Number of extensions: 166600
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)