Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30662
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067943-4|AAC17661.1|  359|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical p...    27   7.0  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AF067943-4|AAC17661.1|  359|Caenorhabditis elegans Hypothetical
           protein F59B1.6 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 121 HRIHDHHSPDRYGILRTSRRSPSCILDSTIRSGCS 17
           H  HD+H+   + I+  S R  + +   TI++GC+
Sbjct: 294 HNYHDNHNQRNFCIVSNSLRHNNILSKHTIQAGCN 328


>Z95559-16|CAB63365.3| 1440|Caenorhabditis elegans Hypothetical
           protein Y41E3.9 protein.
          Length = 1440

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 444 HL-RIFEKKKEIKTRFSF*YEF**QN*VNI*NVADRLLRTLVHLYIELLQILYKSCDESK 268
           HL R+FE +    T F F + F   N  N    A   + T + L       L+K C E++
Sbjct: 209 HLSRLFEPQAVFNTIFEFQWRFWSPNVRNDLIAALPEIFTDISLQQSTAVRLHKECSETQ 268

Query: 267 NLPVAPSF 244
            +P  PSF
Sbjct: 269 GVPGLPSF 276


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 111 MTTIAQTAMVSSGPAAVARAVSWTRPSALDVAS 13
           M T   TA +SS PAA + + + T PS+L  +S
Sbjct: 1   MGTSPTTAGISSSPAATSPSTAVTSPSSLGTSS 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,365,973
Number of Sequences: 27780
Number of extensions: 149624
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)