Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30662
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.40 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 347 QTDYYE--HSCIYTLSYCKYCIKVVMNPRIY 261
           ++DYY   +  +Y LS C Y     +NP +Y
Sbjct: 298 ESDYYPDLNEWLYILSGCLYYFSTTINPILY 328


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 2    SPP-PLATSRADGRVQDTAR 58
            SPP PL+ SRA  R +D+ R
Sbjct: 1396 SPPTPLSISRAGSRDEDSTR 1415


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 320 IYTLSYCKYCIKVVMNPRIYQ*LLALF 240
           +Y L+ C Y     +NP +Y  + A +
Sbjct: 297 VYPLTGCLYYFSTTINPILYNVMSAKY 323


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 404 LVFISFFFSKILKCIIN 454
           L+FI  F+S++L  I N
Sbjct: 233 LIFIILFYSRLLSSIRN 249


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 404 LVFISFFFSKILKCIIN 454
           L+FI  F+S++L  I N
Sbjct: 233 LIFIILFYSRLLSSIRN 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,870
Number of Sequences: 438
Number of extensions: 1949
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)