Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30660
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 28 0.80
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 26 3.2
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 5.6
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 25 5.6
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 5.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.4
SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 25 7.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 7.4
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 25 9.8
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 9.8
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 9.8
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 25 9.8
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.3 bits (60), Expect = 0.80
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 294 KDDSRNLGRFYDSGAEDISS--SGSDCSTGTRGEERTDHALR 413
K+D+ + + DSG D SG+D S GEE++ AL+
Sbjct: 786 KEDASSTKQAKDSGTNDFDKLISGNDVSKNNSGEEQSRSALK 827
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +1
Query: 16 DNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPV 135
++L++ + D+ + E DD + F Q +YS P+
Sbjct: 476 EDLEIPLLSDYSDSENISEKSSDDEEAFEKQVTSSYSSPI 515
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = +1
Query: 151 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 276
D+ +L ++ L ++AP + +T +V+ + PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 113 KNWLANTSWSSSLASCDPWTKIKS 42
+ W+ N+S S L CD KI+S
Sbjct: 187 EKWMKNSSISEYLQECDSMAKIES 210
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = +1
Query: 151 DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 276
D+ +L ++ L ++AP + +T +V+ + PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +1
Query: 127 LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVET 261
LP S++ + + + G ++ PI+ V T + +PI T
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT 266
>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 225
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -2
Query: 150 SSTRVHR*AIGVEELAGEHVMVVFFSFLRSLDED-KVSLYFNFKVV 16
SS V AI + +AGE ++ F+ SLDE +V+L+ F+ +
Sbjct: 27 SSLDVESRAIEPDNIAGESIVETRFTGGDSLDEPIRVTLFNEFRAI 72
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 7.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 263 PVSTIGTTRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAAL 141
P + TT S+ + +T + V TRY + S+ VTS+++
Sbjct: 451 PTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSI 491
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 103 SQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPI 252
S +H+ SLP SS + + YLV+T + +V T +P+
Sbjct: 121 SSRYHSVSLPCWSSGTGLAGLFGASSYLVMTTWFNFSVRSTLIISSFLPL 170
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -1
Query: 385 PRVPVLQSLPLELMSSAPES*KRPRFLLSSFLQARPSCTERQS 257
P+V VL+S P E KRP+ S + E+Q+
Sbjct: 127 PKVRVLESEPFENTFGPKSQRKRPKISFDSVAELAKESDEKQN 169
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 327 DSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRD 446
D+G+ED+ S + T E++ +LR ++KR+ D
Sbjct: 473 DNGSEDLGSIENKTVEDTGNREKSKKSLRKDIREKKRKID 512
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 429 RKRQRDPTRKRSFCLSDNLVYAFNDI 506
+K Q++ +RK L NLVY+ ND+
Sbjct: 177 KKMQKNLSRKLDNELERNLVYSMNDL 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,531
Number of Sequences: 5004
Number of extensions: 31333
Number of successful extensions: 100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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