Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30660
         (553 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   43   2e-04
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 36   0.029
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 32   0.27 
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)               30   1.1  
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)               29   1.9  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   4.4  
SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)             28   5.8  
SB_867| Best HMM Match : Leo1 (HMM E-Value=0)                          28   5.8  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 30/109 (27%), Positives = 55/109 (50%)
 Frame = +1

Query: 1   KDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDG 180
           K+Y+ + + +KV+   I + G  ++ E +H    S+F  +Y+LP     + V++ +T DG
Sbjct: 48  KNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDG 106

Query: 181 YLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTVETLDVST 327
            L + A  +E     + TE  +    TG+     +  +K    TLDVS+
Sbjct: 107 LLHIEALKAE----PQETEVSLVGASTGSAGDIAKIDDKRFTVTLDVSS 151


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 35.5 bits (78), Expect = 0.029
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = +1

Query: 1   KDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDG 180
           K+Y+ + +  KV+   + VQG +   E +      +F  T++LP      +VT+ +++ G
Sbjct: 15  KEYRPEEISFKVENGVVKVQG-RHVNEGEFGFELKEFRRTFTLPEGIDPENVTSRISNHG 73

Query: 181 YLVVTA 198
           +L + A
Sbjct: 74  HLHIEA 79


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 4   DYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVF-ASQFFHTYSLPVNSSAADVTAELTSDG 180
           D+K + + VKV G  + V+  QE +E  H  F A QF   + LP       +   L  DG
Sbjct: 108 DFKPEEVDVKVYGHELSVRARQECEE--HGFFTARQFNRHFVLPREVDMDTLVPRLGKDG 165

Query: 181 YLVVTA 198
            L + A
Sbjct: 166 VLYIEA 171



 Score = 31.5 bits (68), Expect = 0.47
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 1   KDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDG 180
           +++K + +  KV+   I V G Q   E +    + +F   Y+LP     + ++  +  DG
Sbjct: 14  REFKPEEITCKVENGKIKVSGLQR-HESEEGFDSKEFRRCYNLPEGVDESSISTRIAEDG 72

Query: 181 YLVVTA 198
            L V A
Sbjct: 73  MLHVEA 78


>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
          Length = 857

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 294 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCL 473
           KD+ RNLG+  D   E+  S G++   G +  E T      + +    Q  P  ++SF L
Sbjct: 303 KDEDRNLGKNKDERHEEY-SKGNENMDGIKPFELTPEIEAIQSTTTDEQNKPNTEQSFLL 361

Query: 474 SD 479
           S+
Sbjct: 362 SE 363


>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
          Length = 625

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 121 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 273
           YS+    S       + SD YL+ TA +SE +D +    R V I  TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 255 RDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEER 395
           R WR+V   R C +  S    +  D GA  + +  + C TGT  E R
Sbjct: 343 RVWRTVPPQRVCLEVPSEKARKIPDDGALTVRTEATGC-TGTANEIR 388


>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 378 TRGEERTDHALRTR*SDRKRQRDPTRKRSF 467
           TRG ER++HA +     RK +++ T+  SF
Sbjct: 240 TRGHERSEHAEKAAELKRKEKKEATKHNSF 269


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 124  SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKT 300
            ++PVN+ A          G  +VT  ++  V +   T  V P+V   A   K EP  +T
Sbjct: 1250 TMPVNTQAVVANMVTQPHGTTIVTPAVANMVTQPHGTTIVTPVVTQSAVATK-EPARRT 1307


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 61  GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 150
           G+   +E+D DV+A      Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274


>SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 85  DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 264
           D DV+A Q    YS PV    +  +   +  G L  T   +   +KT+N +    I+E  
Sbjct: 61  DFDVYAHQSETEYSGPVPDPNSRPSGTYSKIGTLNATKLWTSFGNKTQNVQTFSLILENS 120

Query: 265 APY 273
            PY
Sbjct: 121 KPY 123


>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
          Length = 617

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = +1

Query: 85  DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 264
           D DV+A Q    YS PV       +   +  G L  T       +KT+N + +  I+E  
Sbjct: 137 DFDVYAHQSETQYSGPVPDPNNSPSGTCSKIGTLNATELSPSLGNKTQNVQTLSLILENS 196

Query: 265 APY 273
            PY
Sbjct: 197 KPY 199


>SB_867| Best HMM Match : Leo1 (HMM E-Value=0)
          Length = 591

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 318 RFYDSGAEDISSSG-SDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKR 461
           R Y S  +D    G  D  +   GEER  +A   + S+ +   +P+RKR
Sbjct: 517 RAYSSEEDDGEEEGLGDLESDNEGEERLMNAKEGKDSEEESIEEPSRKR 565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895,714
Number of Sequences: 59808
Number of extensions: 232424
Number of successful extensions: 925
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)