Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30660
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 48 3e-06
M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein ( C.ele... 42 2e-04
AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock pr... 42 2e-04
X01577-1|CAA25732.1| 97|Caenorhabditis elegans protein ( C. el... 42 4e-04
M14334-1|AAA28070.1| 144|Caenorhabditis elegans protein ( C.ele... 42 4e-04
AC006774-2|AAF60616.1| 143|Caenorhabditis elegans Heat shock pr... 42 4e-04
U64837-8|AAB04842.1| 145|Caenorhabditis elegans Heat shock prot... 41 5e-04
U64837-5|AAB04839.1| 145|Caenorhabditis elegans Heat shock prot... 41 5e-04
K03273-4|AAA28068.1| 145|Caenorhabditis elegans heat shock prot... 41 5e-04
K03273-1|AAA28066.1| 146|Caenorhabditis elegans heat shock prot... 41 5e-04
Z77657-3|CAB01147.1| 147|Caenorhabditis elegans Hypothetical pr... 40 0.001
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 38 0.005
U41109-5|AAB37035.1| 149|Caenorhabditis elegans Heat shock prot... 36 0.019
U41109-4|AAQ62453.1| 148|Caenorhabditis elegans Heat shock prot... 36 0.019
U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock prot... 36 0.019
U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock prot... 36 0.019
U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock prot... 36 0.019
Z81125-8|CAB03380.1| 109|Caenorhabditis elegans Hypothetical pr... 33 0.14
Z77657-2|CAB01146.1| 147|Caenorhabditis elegans Hypothetical pr... 32 0.24
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z81125-9|CAL64006.1| 112|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 28 5.1
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 28 5.1
EF035034-1|ABK34454.1| 112|Caenorhabditis elegans heat-shock pr... 28 5.1
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 28 5.1
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 28 5.1
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 28 5.1
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 28 5.1
Z68342-1|CAA92770.1| 109|Caenorhabditis elegans Hypothetical pr... 27 6.8
AF016671-1|AAF02173.1| 621|Caenorhabditis elegans Hypothetical ... 27 6.8
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 48.4 bits (110), Expect = 3e-06
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
Y D+LKV V + I V+GS KED + S F + LP + V ++LT+DG+L
Sbjct: 90 YDADSLKVTVVDNNIIVEGSHGEKEDTYGTIESTFKRRFPLPKAVAPESVQSQLTADGHL 149
Query: 187 VVTAPISENVDKTKNTERV-VPIVETGAPYKK 279
+ A E K + + + ++ T A +K
Sbjct: 150 TIDAKAPE--PKQEGARPIQIKVINTSAEQQK 179
>M14334-2|AAA28071.1| 145|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 145
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+K ++LK+ + G + +QG QE K DH F LP + V + L+ DG L
Sbjct: 59 FKPEDLKINLDGRTLSIQGEQELK-TDHGYSKKSFSRVILLPEDVDVGAVASNLSEDGKL 117
Query: 187 VVTAPISENV 216
+ AP E V
Sbjct: 118 SIEAPKKEAV 127
>AC006774-1|AAF60615.1| 145|Caenorhabditis elegans Heat shock
protein protein 16.2 protein.
Length = 145
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+K ++LK+ + G + +QG QE K DH F LP + V + L+ DG L
Sbjct: 59 FKPEDLKINLDGRTLSIQGEQELK-TDHGYSKKSFSRVILLPEDVDVGAVASNLSEDGKL 117
Query: 187 VVTAPISENV 216
+ AP E V
Sbjct: 118 SIEAPKKEAV 127
>X01577-1|CAA25732.1| 97|Caenorhabditis elegans protein ( C.
elegans mRNA 3'-regionfor heat shock protein hsp 16-41
(exon 2).somal genes.).
Length = 97
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/82 (29%), Positives = 42/82 (51%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+K +NLK+K+ G + ++G QE K +H F LP ++ V + ++++G L
Sbjct: 17 FKPENLKIKLDGRELKIEGIQETK-SEHGYLKRSFSKMILLPEDADLPSVKSAISNEGKL 75
Query: 187 VVTAPISENVDKTKNTERVVPI 252
+ AP K N+ R +PI
Sbjct: 76 QIEAP------KKTNSSRSIPI 91
>M14334-1|AAA28070.1| 144|Caenorhabditis elegans protein (
C.elegans heat shockprotein genes 16-41 and 16-2,
complete cds, flanked byCeRep16 repetitive elements. ).
Length = 144
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/82 (29%), Positives = 42/82 (51%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+K +NLK+K+ G + ++G QE K +H F LP ++ V + ++++G L
Sbjct: 64 FKPENLKIKLDGRELKIEGIQETK-SEHGYLKRSFSKMILLPEDADLPSVKSAISNEGKL 122
Query: 187 VVTAPISENVDKTKNTERVVPI 252
+ AP K N+ R +PI
Sbjct: 123 QIEAP------KKTNSSRSIPI 138
>AC006774-2|AAF60616.1| 143|Caenorhabditis elegans Heat shock
protein protein 16.41 protein.
Length = 143
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/82 (29%), Positives = 42/82 (51%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+K +NLK+K+ G + ++G QE K +H F LP ++ V + ++++G L
Sbjct: 63 FKPENLKIKLDGRELKIEGIQETK-SEHGYLKRSFSKMILLPEDADLPSVKSAISNEGKL 121
Query: 187 VVTAPISENVDKTKNTERVVPI 252
+ AP K N+ R +PI
Sbjct: 122 QIEAP------KKTNSSRSIPI 137
>U64837-8|AAB04842.1| 145|Caenorhabditis elegans Heat shock protein
protein 16.11 protein.
Length = 145
Score = 41.1 bits (92), Expect = 5e-04
Identities = 26/93 (27%), Positives = 41/93 (44%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+K ++LK+ + G + +QG QE K +H F LP + V + L+ DG L
Sbjct: 59 FKPEDLKINLDGHTLSIQGEQELK-TEHGYSKKSFSRVILLPEDVDVGAVASNLSEDGKL 117
Query: 187 VVTAPISENVDKTKNTERVVPIVETGAPYKKDE 285
+ AP E + R +PI + K E
Sbjct: 118 SIEAPKKEAIQ-----GRSIPIQQAPVEQKTSE 145
>U64837-5|AAB04839.1| 145|Caenorhabditis elegans Heat shock protein
protein 16.1 protein.
Length = 145
Score = 41.1 bits (92), Expect = 5e-04
Identities = 26/93 (27%), Positives = 41/93 (44%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+K ++LK+ + G + +QG QE K +H F LP + V + L+ DG L
Sbjct: 59 FKPEDLKINLDGHTLSIQGEQELK-TEHGYSKKSFSRVILLPEDVDVGAVASNLSEDGKL 117
Query: 187 VVTAPISENVDKTKNTERVVPIVETGAPYKKDE 285
+ AP E + R +PI + K E
Sbjct: 118 SIEAPKKEAIQ-----GRSIPIQQAPVEQKTSE 145
>K03273-4|AAA28068.1| 145|Caenorhabditis elegans heat shock protein
16-1a protein.
Length = 145
Score = 41.1 bits (92), Expect = 5e-04
Identities = 26/93 (27%), Positives = 41/93 (44%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+K ++LK+ + G + +QG QE K +H F LP + V + L+ DG L
Sbjct: 59 FKPEDLKINLDGHTLSIQGEQELK-TEHGYSKKSFSRVILLPEDVDVGAVASNLSEDGKL 117
Query: 187 VVTAPISENVDKTKNTERVVPIVETGAPYKKDE 285
+ AP E + R +PI + K E
Sbjct: 118 SIEAPKKEAIQ-----GRSIPIQQAPVEQKTSE 145
>K03273-1|AAA28066.1| 146|Caenorhabditis elegans heat shock protein
16-1 protein.
Length = 146
Score = 41.1 bits (92), Expect = 5e-04
Identities = 26/93 (27%), Positives = 41/93 (44%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+K ++LK+ + G + +QG QE K +H F LP + V + L+ DG L
Sbjct: 60 FKPEDLKINLDGHTLSIQGEQELK-TEHGYSKKSFSRVILLPEDVDVGAVASNLSEDGKL 118
Query: 187 VVTAPISENVDKTKNTERVVPIVETGAPYKKDE 285
+ AP E + R +PI + K E
Sbjct: 119 SIEAPKKEAIQ-----GRSIPIQQAPVEQKTSE 146
>Z77657-3|CAB01147.1| 147|Caenorhabditis elegans Hypothetical
protein F08H9.4 protein.
Length = 147
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 4 DYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGY 183
++K + LKV ++G + +QG + E++H F LP + V L++DG
Sbjct: 60 NFKPEELKVNLEGRQLSIQGEHDV-ENEHGASRKSFSRMILLPEDVDITSVATNLSNDGK 118
Query: 184 LVVTAPISENV 216
L + AP E V
Sbjct: 119 LCIEAPKLEGV 129
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 22 LKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 198
++VKV G + + E + D+H A + Y LP + + V + L + G L +TA
Sbjct: 48 IEVKVSGQELLIHCRHETRSDNHGTVAREINRAYKLPDDVDVSTVKSHLATRGVLTITA 106
>U41109-5|AAB37035.1| 149|Caenorhabditis elegans Heat shock protein
protein 17,isoform a protein.
Length = 149
Score = 35.9 bits (79), Expect = 0.019
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
++ + LKV + + + ++G K D + F Y+LP + +EL+++G L
Sbjct: 66 FEPEELKVNIVDNQLIIEGKHNEKTDKYGQVERHFVRKYNLPTGVRPEQIKSELSNNGVL 125
Query: 187 VV 192
V
Sbjct: 126 TV 127
>U41109-4|AAQ62453.1| 148|Caenorhabditis elegans Heat shock protein
protein 17,isoform b protein.
Length = 148
Score = 35.9 bits (79), Expect = 0.019
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +1
Query: 7 YKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
++ + LKV + + + ++G K D + F Y+LP + +EL+++G L
Sbjct: 65 FEPEELKVNIVDNQLIIEGKHNEKTDKYGQVERHFVRKYNLPTGVRPEQIKSELSNNGVL 124
Query: 187 VV 192
V
Sbjct: 125 TV 126
>U29612-8|AAW57827.1| 108|Caenorhabditis elegans Heat shock protein
protein 25,isoform c protein.
Length = 108
Score = 35.9 bits (79), Expect = 0.019
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1
Query: 4 DYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGY 183
+YK + + VK + + V E K VF ++ + LP ++ +++ L++DG
Sbjct: 36 NYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGV 94
Query: 184 LVVTAPISE 210
L V AP+ +
Sbjct: 95 LTVEAPLPQ 103
>U29612-7|AAO61437.1| 205|Caenorhabditis elegans Heat shock protein
protein 25,isoform b protein.
Length = 205
Score = 35.9 bits (79), Expect = 0.019
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1
Query: 4 DYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGY 183
+YK + + VK + + V E K VF ++ + LP ++ +++ L++DG
Sbjct: 133 NYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGV 191
Query: 184 LVVTAPISE 210
L V AP+ +
Sbjct: 192 LTVEAPLPQ 200
>U29612-6|AAA68804.1| 219|Caenorhabditis elegans Heat shock protein
protein 25,isoform a protein.
Length = 219
Score = 35.9 bits (79), Expect = 0.019
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1
Query: 4 DYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGY 183
+YK + + VK + + V E K VF ++ + LP ++ +++ L++DG
Sbjct: 147 NYKPEEVTVKTIDNRLLVHAKHEEKTPQRTVFR-EYNQEFLLPRGTNPEQISSTLSTDGV 205
Query: 184 LVVTAPISE 210
L V AP+ +
Sbjct: 206 LTVEAPLPQ 214
>Z81125-8|CAB03380.1| 109|Caenorhabditis elegans Hypothetical
protein T22A3.2a protein.
Length = 109
Score = 33.1 bits (72), Expect = 0.14
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 16 DNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVT 195
+++ VKV G I + + + ++ + + TY LP + + V + L S G L +T
Sbjct: 46 NDIDVKVNGIEIIIHLRHDNRPTEYGIVNREVHRTYKLPEDVDPSTVRSHLNSSGVLTIT 105
Query: 196 A 198
A
Sbjct: 106 A 106
>Z77657-2|CAB01146.1| 147|Caenorhabditis elegans Hypothetical
protein F08H9.3 protein.
Length = 147
Score = 32.3 bits (70), Expect = 0.24
Identities = 14/66 (21%), Positives = 33/66 (50%)
Frame = +1
Query: 4 DYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGY 183
D K + LK+ ++G + ++ + E+D+ + + LP + +++ L+ DG
Sbjct: 59 DVKPEELKINLEGRKLSIKAEHQEIENDNISTTQTYSKSIVLPEDVDVTHLSSNLSEDGK 118
Query: 184 LVVTAP 201
L++ P
Sbjct: 119 LLIEVP 124
>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
protein C16C10.3 protein.
Length = 1032
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +3
Query: 231 YRARCTYCRDWRSVQEGRACR---KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTD 401
YR + RD+R V R +D+SR YDS + SS+G+D S E +
Sbjct: 324 YRGGRSDSRDFRGVYGNRGGNDRYRDESRGRRDMYDSRRDSGSSNGADYSPSDAAE--LE 381
Query: 402 HALRTR 419
HA R
Sbjct: 382 HAFGER 387
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
protein C06B8.7 protein.
Length = 3118
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 225 EKYRARCTYCRDWRSVQEGRACR 293
+++R+ CT +W S+ G ACR
Sbjct: 146 DRWRSVCTMVTNWTSIDTGTACR 168
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 163 ELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTVETLDVSTTQ 333
E + GY PI ++ + +T+R P V P D P +K + LDV +Q
Sbjct: 1734 ENKTSGYDSSGNPI-RSITSSGDTQRAPPYVSNLLPSSNDSPDDKVIKQVLDVMFSQ 1789
>Z81125-9|CAL64006.1| 112|Caenorhabditis elegans Hypothetical
protein T22A3.2b protein.
Length = 112
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 16 DNLKVKVKGDFIFVQGSQEAKED---DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+++ VKV G I + + ++ ++ + + TY LP + + V + L S G L
Sbjct: 46 NDIDVKVNGIEIIIHLRHDLLQNRPTEYGIVNREVHRTYKLPEDVDPSTVRSHLNSSGVL 105
Query: 187 VVTA 198
+TA
Sbjct: 106 TITA 109
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 198 ADQRKC**NEKYRARCTYCRDWRSVQEG 281
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 198 ADQRKC**NEKYRARCTYCRDWRSVQEG 281
A + C +++YR+RC YCR + ++ G
Sbjct: 149 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 176
>EF035034-1|ABK34454.1| 112|Caenorhabditis elegans heat-shock
protein 12.1 protein.
Length = 112
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 16 DNLKVKVKGDFIFVQGSQEAKED---DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYL 186
+++ VKV G I + + ++ ++ + + TY LP + + V + L S G L
Sbjct: 46 NDIDVKVNGIEIIIHLRHDLLQNRPTEYGIVNREVHRTYKLPEDVDPSTVRSHLNSSGVL 105
Query: 187 VVTA 198
+TA
Sbjct: 106 TITA 109
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 198 ADQRKC**NEKYRARCTYCRDWRSVQEG 281
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 198 ADQRKC**NEKYRARCTYCRDWRSVQEG 281
A + C +++YR+RC YCR + ++ G
Sbjct: 155 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 182
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 198 ADQRKC**NEKYRARCTYCRDWRSVQEG 281
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 118 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 294
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 429 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQ 488
Query: 295 KTTVETLDVSTTQ 333
TT+ + ++T+
Sbjct: 489 TTTITAPETTSTE 501
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 118 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 294
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 682 TSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQ 741
Query: 295 KTTVETLDVSTTQ 333
TT+ + ++T+
Sbjct: 742 TTTITAPETTSTE 754
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 118 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 294
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 820 TSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQ 879
Query: 295 KTTVETLDVSTTQ 333
TT+ + ++T+
Sbjct: 880 TTTITAPETTSTE 892
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 118 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 294
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 751 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQ 810
Query: 295 KTTVETLDVSTTQ 333
TT+ + ++T+
Sbjct: 811 TTTITAPETTSTE 823
>Z68342-1|CAA92770.1| 109|Caenorhabditis elegans Hypothetical
protein F38E11.1 protein.
Length = 109
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/64 (20%), Positives = 28/64 (43%)
Frame = +1
Query: 4 DYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGY 183
++ + + VK G+F+ + + K+D Y LP + A + ++L G
Sbjct: 41 NFLPNEIDVKNIGEFLEIHMAHTTKDDKFGSITRSITRCYRLPKGTDPATIKSKLDGSGI 100
Query: 184 LVVT 195
L ++
Sbjct: 101 LHIS 104
>AF016671-1|AAF02173.1| 621|Caenorhabditis elegans Hypothetical
protein W09G10.6 protein.
Length = 621
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/77 (25%), Positives = 39/77 (50%)
Frame = +1
Query: 1 KDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDG 180
KD D + VK +QGSQ +K+ A + + S + +S++++TA+LTS
Sbjct: 202 KDSNTDEASLNVK-----LQGSQASKDQKASSGAFKSLLSQSSDLTASSSNLTAQLTSTN 256
Query: 181 YLVVTAPISENVDKTKN 231
+ +S+ ++ K+
Sbjct: 257 LGGSGSELSQKLNDLKS 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,625,720
Number of Sequences: 27780
Number of extensions: 171403
Number of successful extensions: 729
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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