Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30660
(553 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g53800.1 68418.m06685 expressed protein 33 0.17
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ... 32 0.29
At3g49800.1 68416.m05445 BSD domain-containing protein contains ... 29 1.6
At2g04900.1 68415.m00509 expressed protein 29 2.1
At2g46860.1 68415.m05847 inorganic pyrophosphatase, putative [so... 29 2.7
At1g64550.1 68414.m07317 ABC transporter family protein similar ... 28 3.6
At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related... 28 4.8
At3g11310.1 68416.m01375 hypothetical protein 28 4.8
At3g07090.1 68416.m00843 expressed protein 28 4.8
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 4.8
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 4.8
At1g01050.1 68414.m00005 inorganic pyrophosphatase, putative [so... 28 4.8
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +3
Query: 291 RKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFC 470
R++ R DSG+E SGS+ R R D R SDRK R R+R +
Sbjct: 47 RRESKRRTKDGNDSGSESGLESGSESEKEERRRSRKDRGKRK--SDRKSSRSRRRRRDYS 104
Query: 471 LSDN 482
S +
Sbjct: 105 SSSS 108
>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 657
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 109 FFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTER--VVPIVETGA 267
F H +N++A+D+ + G +P++ENVD K+T PIV +G+
Sbjct: 19 FAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHTSESFSFPIVSSGS 73
>At3g49800.1 68416.m05445 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 428
Score = 29.5 bits (63), Expect = 1.6
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +1
Query: 88 HDVFASQFFHTYSLP-VNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 264
H +F+ T S P V S A ++ EL T + E+ D+ ++E V P+ +
Sbjct: 244 HPIFSKHDALTLSTPQVLESRALLSHELLRKRNKD-TVVVPESSDRGADSENVEPLFQPT 302
Query: 265 APYKKDEP--VEKTTVETLDVSTTQE 336
P K EP V+ TVET+ + E
Sbjct: 303 NPSPKSEPEPVKTITVETIHSAERSE 328
>At2g04900.1 68415.m00509 expressed protein
Length = 128
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -3
Query: 242 TRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTG 129
T S++ ++ T +L+ A +T+YP+ +T+ + F+G
Sbjct: 58 TASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95
>At2g46860.1 68415.m05847 inorganic pyrophosphatase, putative
[soluble] / pyrophosphate phospho-hydrolase, putative /
PPase, putative strong similarity to SP|Q43187 Soluble
inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate
phospho- hydrolase) (PPase) {Solanum tuberosum};
contains Pfam profile PF00719: inorganic pyrophosphatase
Length = 216
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 1 KDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHT 120
+DYKK+ K DF+ + + EA + D++A HT
Sbjct: 174 EDYKKNENKKVAVNDFLPSESAHEAIQYSMDLYAEYILHT 213
>At1g64550.1 68414.m07317 ABC transporter family protein similar to
ABC transporter protein GB:AAF31030 GI:6899653 from
[Leishmania major]
Length = 715
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 127 LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIV----ETGAPYKKDEPVE 294
+P N V E+ D + ++ ++++TK E + I+ ET P KD
Sbjct: 228 IPTNCQILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPT 287
Query: 295 KTTVE 309
K TVE
Sbjct: 288 KDTVE 292
>At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related
protein, putative similar to kinesin like protein
GB:CAB10194 from [Arabidopsis thaliana]
Length = 1313
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 294 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHAL 410
KD+S N S A D++ + C T G E TD+AL
Sbjct: 555 KDESYNNSHLKSSEATDVNMEDACCQTENNGSE-TDNAL 592
>At3g11310.1 68416.m01375 hypothetical protein
Length = 539
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = +1
Query: 55 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELT-------SDGYLVVTAPISEN 213
V GS+ +DDH + F + P +SS D+ +T D Y+V+ +
Sbjct: 339 VPGSEGGADDDHHIVMDHHFESPHDPASSSEIDLNEPVTGSEGGADDDHYIVLNHLVESP 398
Query: 214 VDKTKNTE 237
D+ ++E
Sbjct: 399 HDRAPSSE 406
>At3g07090.1 68416.m00843 expressed protein
Length = 265
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 175 DGYLVVTAPISENVDKTKNTERVVPIVETGAPYK--KDEPV 291
DG +V AP E + + TE+V P+++ A + KD+P+
Sbjct: 177 DGPQIVIAPKLEAAETSTATEKVPPVIQPSASKEKVKDDPL 217
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 194 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 108
V R PSE++S++ +A L T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 194 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 108
V R PSE++S++ +A L T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564
>At1g01050.1 68414.m00005 inorganic pyrophosphatase, putative
[soluble] / pyrophosphate phospho-hydrolase, putative /
PPase, putative strong similarity to SP|Q43187 Soluble
inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate
phospho- hydrolase) (PPase) {Solanum tuberosum};
contains Pfam profile PF00719: inorganic pyrophosphatase
Length = 212
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 1 KDYKKDNLKVKVKGDFIFVQGSQEAKEDDHDVFASQFFHT 120
+DYKK+ K DF+ + + EA + D++A HT
Sbjct: 170 EDYKKNENKEVAVNDFLPSESAVEAIQYSMDLYAEYILHT 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,008,492
Number of Sequences: 28952
Number of extensions: 158489
Number of successful extensions: 549
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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