Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30658
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    27   2.5  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    27   3.3  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   3.3  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   4.4  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   7.7  

>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 394 FFLRIQSINLSFVYFSIQI*ELVVYHHH 311
           +FLR++SI+  F  F I I E +VY ++
Sbjct: 77  YFLRLESIDYEFSEFHIIINESIVYPYY 104


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 645 GGTTFYIIKLPLGPHVSMWVAAFILYRLRALVTSHTRWAISSF 517
           G  TF ++KL +  +   W A  I+ + + L+TS  + A   F
Sbjct: 174 GSGTFAVVKLAVEVNSGKWYAIKIINKRKILLTSSEKRATEMF 216


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 401 GVSAKVTDLMQSTLLSSCFS*KYGIMQVDLF 493
           GVS +      S +LS CF  KY ++ VD F
Sbjct: 255 GVSLQSFQFRSSQILSLCFRPKYKMLLVDTF 285


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 335 LNLDRKVNE*EINRLNSKKEFDGVSAKVTDLMQSTLLSSCF 457
           L+L+ K+ + E+N+   KK+F G    + D    +L+SS F
Sbjct: 387 LSLELKLMQNELNKGQLKKQFKGDLRNLADWNNLSLVSSKF 427


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 652  FEGWDNLLYNKIATWTSCVNVGGSIHFVSSTGTGDFP--YQVG 530
            FE W   LYN + T    V +G    FVS+     +P  YQ+G
Sbjct: 996  FESWSISLYNVLFTVLPPVVIGIFDQFVSAGQLFQYPQLYQLG 1038


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,209
Number of Sequences: 5004
Number of extensions: 46591
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)