Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30658
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820...    28   6.0  
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163...    28   6.0  
01_04_0102 + 16030094-16030462,16030595-16030714,16031715-160317...    28   6.0  
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    28   7.9  

>04_04_0584 +
           26381220-26381232,26381583-26381594,26381921-26382028,
           26382137-26382217,26382320-26382465,26382550-26382624,
           26382709-26382756,26382845-26382994,26383081-26383140,
           26383394-26384274,26384674-26385670,26385887-26385895
          Length = 859

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 361 FVYFSIQI*ELVVYHHH*SMHNVVACPWHGNRTRYFPQVTSYAPKLT--RNEKKKTSQST 188
           F +++ Q+   VV  HH   +   +    G  T+Y  Q   Y       + +KKKT Q  
Sbjct: 322 FNFYAYQVGFSVVITHH---YKSTSKKRFGQITKYTYQCYRYGKNDDGQKKKKKKTQQQR 378

Query: 187 NTRLNTMWHCKVILKI 140
           NT++     CK +L +
Sbjct: 379 NTQVIDRTDCKCMLTV 394


>01_07_0167 -
           41613834-41613842,41614060-41615056,41615456-41616336,
           41616437-41616508,41616590-41616649,41616736-41616885,
           41616974-41617021,41617107-41617181,41617266-41617411,
           41617514-41617594,41617703-41617810,41618046-41618057,
           41618137-41618148,41618499-41618546,41619021-41619105
          Length = 927

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 361 FVYFSIQI*ELVVYHHH*SMHNVVACPWHGNRTRYFPQVTSYAPKLT--RNEKKKTSQST 188
           F +++ Q+   VV  HH   +   +    G  T+Y  Q   Y       + +KKKT Q  
Sbjct: 390 FNFYAYQVGFSVVITHH---YKSTSKKRFGQITKYTYQCYRYGKNDDGQKKKKKKTQQQR 446

Query: 187 NTRLNTMWHCKVILKI 140
           NT++     CK +L +
Sbjct: 447 NTQVIDRTDCKCMLTV 462


>01_04_0102 +
           16030094-16030462,16030595-16030714,16031715-16031792,
           16032760-16032933,16033844-16033921,16034338-16034510,
           16034757-16034912,16036460-16036621,16036815-16036826,
           16036947-16036962,16037663-16037875
          Length = 516

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 319 HHH*SMHNVVACPWHGNRTRYFPQVTSYAPKLTRNEKKKTSQS 191
           HH  S H   +CP HGN      +  S+  +L     ++T  S
Sbjct: 8   HHGGSCHQQQSCPSHGNELSAIDEEVSHLTRLKSEPCERTRAS 50


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 280  WHGNRTRYFPQVTSYAPKLTRNEKKKTSQSTNTRLNTMW 164
            WH ++T  F   ++Y   L   +    S S+++RLN  W
Sbjct: 1402 WHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSW 1440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,834,062
Number of Sequences: 37544
Number of extensions: 292165
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)