Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30657
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 40 3e-04
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 38 0.002
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 36 0.006
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 35 0.010
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 30 0.27
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 30 0.36
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.36
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 28 1.1
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 1.9
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 27 2.6
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 27 2.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.6
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.4
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 3.4
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 3.4
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.5
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 26 5.9
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 5.9
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 5.9
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.8
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 7.8
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 7.8
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.8
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 39.9 bits (89), Expect = 3e-04
Identities = 34/168 (20%), Positives = 79/168 (47%), Gaps = 3/168 (1%)
Frame = -2
Query: 623 ATPEPEDLLLESKPPAETQQADVTKIDDAHVSISMADSVLDESEPFSF-TETQSLEYTTS 447
++PEP ++ + ++ ++ ++ ++ S S ++S ESE S +E+ S E ++S
Sbjct: 62 SSPEPSKKSVKKQKKSKKKEESSSE-SESESSSSESESSSSESESSSSESESSSSESSSS 120
Query: 446 TTQD--IISPRDEANFSVGKNEKIDSDEQMIGIAANLQTTEKDEVKTGDKESDKIETSGI 273
+++ I+ ++ S + +S+E+ + + E + + S + E+
Sbjct: 121 ESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESESESS 180
Query: 272 VENVKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDA 129
+ E+ KT++KK E+S E+ + + E SD+ SD+
Sbjct: 181 SSESEEEEEVVEKTEEKKEGSSESSSDSES-SSDSSSESGDSDSSSDS 227
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 37.5 bits (83), Expect = 0.002
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Frame = -2
Query: 575 ETQQADVTKIDDAHVSISMADSVLDESEPFSFTETQSLEYTTSTTQDIISPRDEANFSVG 396
E + D H + D+ + +E TET T + + + +DE S
Sbjct: 423 EKESKDENNKASLHKDVEEKDTKIT-NEDTGKTETDVKAKETDSIE--ANDKDEKTDSKE 479
Query: 395 KNEKIDSDEQMIGIAANLQTTEKDEVKTGDKE--SDKIETSGIVENVKREDTYE--VKTD 228
+K++ E A+++ E D ++ DKE +D ET+ VE +DT E K D
Sbjct: 480 TEDKVEETESK---EADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDD 536
Query: 227 DK----KSNKIETSGIIENVEREETIEPELSDT 141
+K K+ K+++ + E +E ++ +T
Sbjct: 537 NKEANEKAEKVDSKDVKEKIEEAADLQNSGKET 569
Score = 36.7 bits (81), Expect = 0.003
Identities = 43/202 (21%), Positives = 85/202 (42%), Gaps = 16/202 (7%)
Frame = -2
Query: 674 MEFQYDELIPDNITPSLATPEPEDLLLESKPPAETQQADVT--KIDDAHVSISMADSVLD 501
+E Y+E + S T +++++E KP +QA T + + + S A S +
Sbjct: 305 LESAYNEELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVL 364
Query: 500 ESEPFSFTETQSLEYTT------------STTQDIISPRDEANFSVGKN--EKIDSDEQM 363
SEP T ++ + T S T +I + N N EK D E+
Sbjct: 365 TSEPKDSTSVEAEKTETDEPAVGKGASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEK 424
Query: 362 IGIAANLQTTEKDEVKTGDKESDKIETSGIVENVKREDTYEVKTDDKKSNKIETSGIIEN 183
N + + +V+ D + +T +VK ++T ++ +D K K ++ +
Sbjct: 425 ESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSIEAND-KDEKTDSKETEDK 483
Query: 182 VEREETIEPELSDTLSDAVPIN 117
VE E+ E ++ +D++ ++
Sbjct: 484 VEETESKEADVKAKETDSIEVD 505
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 35.9 bits (79), Expect = 0.006
Identities = 36/183 (19%), Positives = 77/183 (42%)
Frame = -2
Query: 644 DNITPSLATPEPEDLLLESKPPAETQQADVTKIDDAHVSISMADSVLDESEPFSFTETQS 465
D + +TP+ + ++ P + + + + + V +S A+ V +ES + + TQ
Sbjct: 213 DTRKSTASTPQLQQTQAQANAPQQRINPETSSVPETPVGVSAAN-VSNESTELATSATQQ 271
Query: 464 LEYTTSTTQDIISPRDEANFSVGKNEKIDSDEQMIGIAANLQTTEKDEVKTGDKESDKIE 285
+ ++ + + S K+DS + + T TG S I
Sbjct: 272 ----SGLANNVEKSQTPSYMSANHLPKVDSKSPIPFSVPPSRAT-----LTGGYASGSIG 322
Query: 284 TSGIVENVKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPELSDTLSDAVPINVVDP 105
S + R YE+ ++ +K + +++ ++ EE IEPE+ + L + + V+
Sbjct: 323 LS--TPGLSRAPHYELDNGNRLLSKRKLHDLLQQIDSEEKIEPEVEELLLE-IADEFVES 379
Query: 104 ITN 96
+TN
Sbjct: 380 VTN 382
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 35.1 bits (77), Expect = 0.010
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
Frame = -2
Query: 611 PEDLLLESKPPAETQQADVTKIDDAHVSISMADSVLDESEPFSFTETQSLEYTTSTTQDI 432
PEDL L+ K ++ +D+ +D + ++ ++ EP E LE + +DI
Sbjct: 4087 PEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDFE-DPLEENNTLDEDI 4145
Query: 431 ISPRDEANFSVGKNEKIDSDEQMIGIAANLQTTEKDEVKTGDK-ESDKIETSGIVENVKR 255
+D+ + +EK++ D + N ++TE D VK+ ++ E ++ ++N +
Sbjct: 4146 --QQDDFSDLAEDDEKMNEDGFEENVQENEESTE-DGVKSDEELEQGEVPEDQAIDNHPK 4202
Query: 254 EDTYEVKTDDKKSNKIETSGII-ENVEREE 168
D + + GI+ EN E E
Sbjct: 4203 MDAKSTFASAEADEENTDKGIVGENEELGE 4232
Score = 31.9 bits (69), Expect = 0.090
Identities = 29/152 (19%), Positives = 71/152 (46%), Gaps = 9/152 (5%)
Frame = -2
Query: 545 DDAHVSISMADSVLDESEPFSFTETQSLEYTTS-TTQDIISPRDEANFSVGKNEKIDSDE 369
DD ++ + ++S+ +E + LE + T+D + +E + S +N+ +D +
Sbjct: 3930 DDDLEELANEEDTANQSD-LDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEV 3988
Query: 368 QMI--GIAANL------QTTEKDEVKTGDKESDKIETSGIVENVKREDTYEVKTDDKKSN 213
I ++ +L + E+D ++T K +++ + + V +ED + D +
Sbjct: 3989 NDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQE 4048
Query: 212 KIETSGIIENVEREETIEPELSDTLSDAVPIN 117
K + + ++V ++ I+P++ + S P N
Sbjct: 4049 KEDEEEMSDDVGIDDEIQPDIQENNSQPPPEN 4080
Score = 25.4 bits (53), Expect = 7.8
Identities = 31/165 (18%), Positives = 59/165 (35%)
Frame = -2
Query: 560 DVTKIDDAHVSISMADSVLDESEPFSFTETQSLEYTTSTTQDIISPRDEANFSVGKNEKI 381
++ + + + + + S L+ SF E SL Y D + + +
Sbjct: 3610 ELLALKNVYSEVGVNGSPLESFNNSSFNEVSSLGYD----HDFENRAQAVSMLCQIYAIV 3665
Query: 380 DSDEQMIGIAANLQTTEKDEVKTGDKESDKIETSGIVENVKREDTYEVKTDDKKSNKIET 201
I A+ Q+ + + D S+K+ S I + ++ K N +
Sbjct: 3666 IQKHSSISPTASFQSIGHELSRFADLLSNKLFPSSIPLYASADKVSSIRDQQKGINDL-- 3723
Query: 200 SGIIENVEREETIEPELSDTLSDAVPINVVDPITNNHINLKPDNF 66
IE ++ T PELS V + + I+ ++L D F
Sbjct: 3724 ---IEYCRKKRTELPELSYCFKHLVSLQSLKSISRTQVDLTNDEF 3765
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 30.3 bits (65), Expect = 0.27
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = -2
Query: 332 EKDEVKTGDKESDKIETSGIVENVKREDTYEVKTDDKKSNKIETSGIIENVEREETIEPE 153
E ++++ +KE +K E G + +ED+ + K D K S S +IE + P+
Sbjct: 175 ETEKLEANNKE-EKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPPK 233
Query: 152 LSDTLS 135
DT++
Sbjct: 234 FLDTIA 239
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 29.9 bits (64), Expect = 0.36
Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 8/212 (3%)
Frame = -2
Query: 686 HPVSMEFQYDELIPDNITPSLATPEPEDLLL-----ESKPPAETQQA-DVTKIDDAHVSI 525
H +E L I+P ED++ +S+ AE + D +D+A S
Sbjct: 168 HQDKLELIMRRLENSQISPEAVNDIQEDIMYYVECSQSEDFAEDENLYDELNLDEASASY 227
Query: 524 SMADSVLDESEPFSFTETQSLEYTTSTTQDIISPRDEANFSVGKNEKIDSDEQMIGIAAN 345
S S S + + S ++S++++++ + EA EK+ +D + IA
Sbjct: 228 DAERSGRSSSSSHSPSPSAS---SSSSSENLLQDKAEAE------EKVSADASVQDIAEK 278
Query: 344 LQTTEKDEVKTGDKESDKIETSGIVENVKREDTYE-VKTDDKKSNKIETSGIIENVEREE 168
E+ T D+E D+ E + E ++++ + +N ++ + N+ +
Sbjct: 279 ESLDADKELATNDQEDDEEENQAETQKDGAISNNENMQSEVQTTNPSASTSAVTNITKPT 338
Query: 167 TIE-PELSDTLSDAVPINVVDPITNNHINLKP 75
I+ P ++S++ V P T N + P
Sbjct: 339 LIQNPSTPLSVSNS---KVASPETPNATHTAP 367
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.36
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = -2
Query: 197 GIIENVEREETIEPELSDTLSDAVPINVVD--PITNNHINLK 78
G+I+N+E + I E SDTL + + IN ++ N++ NLK
Sbjct: 280 GLIQNLEDSDDIHEESSDTLEEPLLINELNRTSFLNSNNNLK 321
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = -2
Query: 305 KESDKIETSGIVENVKREDTYEVKTDDKKSNKIETS----GIIENVEREETIEPELSDTL 138
K++ I +S +V K ED+++ KTD++ + T+ ++ N E E E DT
Sbjct: 57 KKAISIFSSPVVN--KHEDSFDSKTDEEYLQNVSTTTEDVSMLINTPVTEKYEQEHRDTS 114
Query: 137 SDAVPINVVDPITN 96
+ A P ++V+ N
Sbjct: 115 AQATP-SIVEQSPN 127
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 1.9
Identities = 32/135 (23%), Positives = 54/135 (40%)
Frame = -2
Query: 545 DDAHVSISMADSVLDESEPFSFTETQSLEYTTSTTQDIISPRDEANFSVGKNEKIDSDEQ 366
DD V M D +DE + E LE + T + PR S + E+ + +E+
Sbjct: 262 DDQSVQTDMFDG-MDEDDLAGQIEQGMLELSQDTRESTAEPRAAGEESASEEEEEEEEEE 320
Query: 365 MIGIAANLQTTEKDEVKTGDKESDKIETSGIVENVKREDTYEVKTDDKKSNKIETSGIIE 186
+ E D+ +K +++ I E ++ K D+ +N I + +
Sbjct: 321 E-------EENEADDETRENKRQNRLVREFISE-LESSIQKRRKDADEATNPILRNRFLA 372
Query: 185 NVEREETIEPELSDT 141
+V R T E EL T
Sbjct: 373 DVNRMVT-ELELKRT 386
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 27.1 bits (57), Expect = 2.6
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 6/129 (4%)
Frame = -2
Query: 584 PPAETQQADVTKIDDAHVSISMADSVLDESEPFSFTETQSLEYTTSTTQD--IISPRDEA 411
PP + T I +I S + + PF + SL+ T+ T D II+ A
Sbjct: 121 PPTPSLPQSATNISFDSSAIPNVQSNPNNTAPFPSYSSNSLQLPTNQTADSPIINDHSTA 180
Query: 410 NF-SVGKNEKIDSDE-QMIG--IAANLQTTEKDEVKTGDKESDKIETSGIVENVKREDTY 243
N S G+ DS G + N + +K E+ G+ ES + +V + D
Sbjct: 181 NVTSTGQEHAPDSSSTNSFGGLLLPNQNSPKKSEL--GETESSNTTPANSRNDVPQTDGA 238
Query: 242 EVKTDDKKS 216
DD S
Sbjct: 239 IHDLDDAGS 247
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +3
Query: 216 RLFIVCFNFVCVFTFHILYNTRSFDFIRFFIACFNFVFFSCL 341
R++ + VF +H L + F FF FVFF L
Sbjct: 95 RIYTFFVHSARVFLYHFLNEEKEFTLASFFWGLCRFVFFPVL 136
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 416 EANFSVGKNEKIDSDEQMIGIAANLQTTEKDEVK 315
E+NFS ++E D Q++ + L EKD K
Sbjct: 193 ESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEK 226
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Frame = -2
Query: 353 AANLQTTEKDEVKTGDKESDKIETS----------GIVENVKREDTYEVKTDDKKSNKIE 204
A+N+ + E E TGD + ETS + E ++ED ++++DK +
Sbjct: 67 ASNVVSAEGAEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKAAK--P 124
Query: 203 TSGIIENVEREET 165
I +NVE E T
Sbjct: 125 DGEIKKNVETEVT 137
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 3.4
Identities = 26/86 (30%), Positives = 36/86 (41%)
Frame = -2
Query: 434 IISPRDEANFSVGKNEKIDSDEQMIGIAANLQTTEKDEVKTGDKESDKIETSGIVENVKR 255
II R +AN KN+KI + GI +K K G E+ K + ++NV
Sbjct: 7 IIKAR-KANALAKKNDKIKKKDTDKGIR------QKHSKKEGKDETLKRDVEKFIQNVNS 59
Query: 254 EDTYEVKTDDKKSNKIETSGIIENVE 177
EDT DD S G E ++
Sbjct: 60 EDT--PSEDDSMSMDAFLEGGFEELD 83
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.6 bits (56), Expect = 3.4
Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 1/146 (0%)
Frame = -2
Query: 560 DVTKIDDAHVSISMADSVLDESEPFSFTETQSLEYTTSTTQDIISPRDEAN-FSVGKNEK 384
D +I+ + IS A L E + + L+ ++ + N + EK
Sbjct: 825 DKNQIETLNERISAAADELSSMESINKNQANELKLAKQKCSNLQEKINFGNKLAKEHTEK 884
Query: 383 IDSDEQMIGIAANLQTTEKDEVKTGDKESDKIETSGIVENVKREDTYEVKTDDKKSNKIE 204
I S E+ + A +T E+KT E+D + ++V +D + K+ + + K
Sbjct: 885 ISSLEKDLEAATKTASTLSKELKTVKSENDSL------KSVSNDDQNKEKSVNNEKFKEV 938
Query: 203 TSGIIENVEREETIEPELSDTLSDAV 126
+ + E E+ + E+ D +
Sbjct: 939 SQALAEANEKLNARDEEIERLKVDII 964
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -2
Query: 269 ENVKREDTYEVKTDDKKSNKIETSGIIENVEREET 165
+N K++ +T KKS K+ETS +++ ++ +
Sbjct: 53 KNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSS 87
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/76 (26%), Positives = 38/76 (50%)
Frame = -2
Query: 419 DEANFSVGKNEKIDSDEQMIGIAANLQTTEKDEVKTGDKESDKIETSGIVENVKREDTYE 240
+ ANF V K +K+ ++ + A + EK KT D ++ + +EN+ ++ +
Sbjct: 1655 NSANFDV-KLKKVVAETEFRS-KAKISVYEK---KTRDLQNKITQLEETIENLNKQLSNP 1709
Query: 239 VKTDDKKSNKIETSGI 192
KTD+ S+ ET +
Sbjct: 1710 EKTDESTSSVTETKPV 1725
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 653 LIPDNITPSLATPEPEDLLLES 588
LIPD++T S TP E L+L +
Sbjct: 107 LIPDDVTISALTPSREPLILRT 128
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 198 GSFDFIRLFIVCFNFVCVFTFHILYNTRSFDFIRFFIACFNFVFFSCL*IS 350
GS F+ + I F+ + FH LY F F CF + +C+ +S
Sbjct: 494 GSIPFLVILIELFSILDSLWFHPLYFMFGFSFF-----CFGILVTTCIMVS 539
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/77 (18%), Positives = 33/77 (42%)
Frame = -2
Query: 392 NEKIDSDEQMIGIAANLQTTEKDEVKTGDKESDKIETSGIVENVKREDTYEVKTDDKKSN 213
N I + + N D++ + D+ K +++N++RE+ E +DD+ +
Sbjct: 233 NINISAQTSESAVDWNYLLKTSDDLLSVDELKLKYSNPDLIKNIEREEEAEETSDDEPLS 292
Query: 212 KIETSGIIENVEREETI 162
+ E++ E +
Sbjct: 293 SEDEENEDEDITEESNL 309
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 469 CVSVNENGSDSSNTESAMLILTCASSILVTS 561
C SVN +D + ES M + T + ILV +
Sbjct: 432 CASVNLLNADDKSQESLMQLFTTMAHILVVT 462
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 499 NLSRFRSRKHNLSNIQHQRLKILF--HLEMKPIFQLGKMRKSI 377
N +RF SRK S I ++++++ HL + LG+ ++SI
Sbjct: 208 NKTRFSSRKPGASQILSSKVQLMYYVHLFLNYFPSLGEKQQSI 250
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -2
Query: 560 DVTKIDDAHVSISMADSVLDE 498
++ K+DD+HV +S+ ++V D+
Sbjct: 461 NLRKVDDSHVGLSLDETVCDK 481
>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 344 LQTTEKDEVKTGDKESDKIETSGIVENVKREDTYEVKTDDKKSNKIET 201
L+ E+DE +TGD E + I ++T +TD S +E+
Sbjct: 189 LEVIEQDE-ETGDVEMSSMRGQAITTEPASDNTMAEETDCNTSKDVES 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,215
Number of Sequences: 5004
Number of extensions: 53667
Number of successful extensions: 270
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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