Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30656
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    31   0.10 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   0.73 
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.73 
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   9.0  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = -1

Query: 420  YLGM*APSATKPFSSAV*STL*VT-----PSGPTYS*NP--LTLMPSFSVPTFSTLPASS 262
            Y G+ +P  T PFSSA+     +T     PS P YS +P  +   PS+S  + S  P S 
Sbjct: 1531 YKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590

Query: 261  ARILFSVSYK*W*PS-GATSLS 199
            +    S SY    PS  ATS S
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPS 1612


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -1

Query: 399 SATKPFSSAV*STL*VTPSGPTYS*NPLTL-MPSFSVPTFSTLPASSARILFSVSYK*W* 223
           ++T   SS+  S++  +P+G   S    TL M   S P FS   + S+++  SVSY    
Sbjct: 130 TSTVDISSSTSSSVINSPTGTAVSSQISTLSMSPSSTPVFSPSASVSSKVASSVSYVSSE 189

Query: 222 PSGATS 205
           PS ++S
Sbjct: 190 PSDSSS 195


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 200 DNDVAPEGYHYLYETENKI 256
           DND+ PE Y  LYE E+K+
Sbjct: 132 DNDLEPEVYDILYEEESKL 150


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 231 TCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNT 335
           T  RP  + +LK P  S + AP++ +S +  S  T
Sbjct: 500 TVCRPHKKVTLKMPLNSGSSAPQSPSSNTSASVLT 534


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 373 SVVYSVGDTVGANVFVESLDLDAFVFGANVL 281
           +V Y + DT+ A   VE+ D      GANV+
Sbjct: 79  TVTYELNDTLNAKAEVEAKDNVYLWLGANVM 109


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +3

Query: 219 KATTTCTRPRTRFSLKKPA----RSRTLAPKTKASRSRDSTNTLAPT 347
           K TTT +   T FS  KPA     ++  AP +  ++   ST    PT
Sbjct: 286 KGTTTTSSAGTGFSFGKPATTEDTNKPTAPNSAFTKPATSTGDNKPT 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,485
Number of Sequences: 5004
Number of extensions: 29179
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)