Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30656
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)            31   0.43 
SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)                     29   1.7  
SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   29   2.3  
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  29   2.3  
SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)                    28   4.0  
SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)                   28   4.0  
SB_54983| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                  27   7.0  
SB_57201| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.3  

>SB_57834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +2

Query: 245 ENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGF 391
           EN  L +  GK   + + +  I   G+YEY GP  +  RV   AD  GF
Sbjct: 154 ENSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMYARVIVWADHLGF 201


>SB_46682| Best HMM Match : Fibrinogen_C (HMM E-Value=0.022)
          Length = 395

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 236 YETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGF 391
           + ++N  L +  GK   + + +  I   G+YEY GP  +  RV   AD  GF
Sbjct: 315 FTSKNSTLTQNCGKW-GISSSSVEINRWGYYEYTGPKRMYARVIVWADHLGF 365


>SB_34070| Best HMM Match : Mucin (HMM E-Value=5.8)
          Length = 541

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +3

Query: 216 PKATTTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAP 344
           PK T   TRP+TR   +   R +T  PKTK S+S+  T T  P
Sbjct: 270 PK-TRPKTRPKTRPKTRPKTRPKT-RPKTK-SKSKSKTKTATP 309


>SB_11312| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 516

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +2

Query: 110 SKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKILAEEAGKVENV 289
           + ++ P  V +K   P G   DY Y +   D  +A   YH L   E          +E++
Sbjct: 183 ANIIAPISVVNKF--PPGTVVDYAYNVFYQDRKIAHTPYHALTVGERDCYNARRDMLEHL 240

Query: 290 G 292
           G
Sbjct: 241 G 241


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 136 NVCGCDHLAGNVCGCDWHGNGRL 68
           N  GC+   GN  GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404


>SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1205

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/70 (30%), Positives = 32/70 (45%)
 Frame = +2

Query: 188 IIRYDNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVD 367
           I+RYD +  P  Y      E++I  E   K +++     G+   GF+E +G        D
Sbjct: 491 IVRYDRNKVPSLYQLFKFIESRIEFELRTKHKSIFGYALGVIFAGFFEGIGMFKPKLG-D 549

Query: 368 YTADENGFVA 397
              +ENG VA
Sbjct: 550 SKLNENGHVA 559


>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 145 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 17
           L GN CG   L GN CG   +GN       GN +G+   +  V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279


>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
          Length = 877

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = -3

Query: 130 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 50
           CG CD     AG V  CDW G+G L  D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698


>SB_3330| Best HMM Match : RBM1CTR (HMM E-Value=0.62)
          Length = 546

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 228 TTCTRPRTRFSLKKPARSRTLAPKTKASRSRDSTNTLAPTV 350
           T  T  R R+ +  P RS  L P+ +ASRSRD     APT+
Sbjct: 262 TELTERRKRYFVS-PLRSSCLWPRGRASRSRD--GACAPTM 299


>SB_54983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 243 PRTRFSLKKPARSRTLAPKTKASRSRD 323
           P+T+    KP  +R  + KTK SR++D
Sbjct: 25  PKTKTKTSKPQAARQASRKTKTSRTQD 51


>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 231 TCTRPRTRFSLKKPARSRTLAPKTKASRSRDS 326
           TC   R + SL  P+ S + +P   A+R RDS
Sbjct: 44  TCPHCRAKASLPSPSPSPSPSPSQGATRERDS 75


>SB_3924| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 344

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 243 PRTRFSLKKPARSRTLAPKTKASRSRDSTNTLA 341
           P+T+ +  KPAR R  +PK K S+ +D    +A
Sbjct: 289 PKTKST--KPARPRQASPKAKTSKPQDQDKQVA 319


>SB_57201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 285 TLAPKTKASRSRDSTNTL 338
           T+APKTK SR+  +TNT+
Sbjct: 11  TMAPKTKCSRATMATNTV 28


>SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 336

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 239 ETENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVDYTADENGFV 394
           E   K  + ++GK  ++ T+ + ++ K  Y     +G++Y     A ENGF+
Sbjct: 41  EFRGKHQSSKSGKFFDLFTDEKALQRKYTYSADVCEGLSYAAKRFASENGFI 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,608
Number of Sequences: 59808
Number of extensions: 240070
Number of successful extensions: 799
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)