Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30656
         (519 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42150.1 68415.m05217 DNA-binding bromodomain-containing prot...    27   5.7  
At1g73990.1 68414.m08569 peptidase U7 family protein similar to ...    27   7.6  
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4...    27   7.6  
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    27   7.6  

>At2g42150.1 68415.m05217 DNA-binding bromodomain-containing protein
           contains Pfam domains, PF00439: Bromodomain and PF00249:
           Myb-like DNA-binding domain
          Length = 631

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 453 LEKKKKKNSRGGPVPNSP 506
           LE+KK+++  G PVPN P
Sbjct: 140 LERKKERSDSGEPVPNPP 157


>At1g73990.1 68414.m08569 peptidase U7 family protein similar to
           protease IV GB:AAA57008 from [Escherichia coli];
           contains Pfam profile PF01343: Peptidase family U7
          Length = 677

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +2

Query: 188 IIRYDNDVAPEGYHYLYETENKILAEEAGKVENVGTENEGIKVKGFYEYVG 340
           +I   +DVA  G +Y+    N I+AE      ++G       +   YE +G
Sbjct: 450 VIASMSDVAASGGYYMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIG 500


>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
            from [Arabidopsis thaliana]
          Length = 1529

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 242  TENKILAEEAGKVENVGTENEGIKVKGFYEYVGPDGVTYRVD 367
            TE ++L E+  K+E +  E EG+K     E    D  T + D
Sbjct: 966  TETQVLVEDTQKIEALTEEVEGLKANLEQEKQRADDATRKFD 1007


>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -3

Query: 148 HLAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 2
           H  G  CG  H  G   GC   G G    G G + G + S   V A  L
Sbjct: 781 HHGGGGCGGGHHGGGGGGCGGCGGGGC--GGGGDGGGMTSRAVVAASTL 827


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,454,191
Number of Sequences: 28952
Number of extensions: 164352
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)