Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30655
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    32   0.097
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   2.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    27   3.6  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   4.8  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   6.4  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    25   8.4  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   8.4  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   8.4  

>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 31.9 bits (69), Expect = 0.097
 Identities = 23/66 (34%), Positives = 33/66 (50%)
 Frame = +1

Query: 361 EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLPVGENLQDHLFVPVFYTKPGDKK 540
           ++VV+AGAI  P LL +S I  +KH E  +   + +LPV   L         +T P  K+
Sbjct: 290 DIVVNAGAIALPILLKMSSIMKKKHTEWTS---QGELPVEIFLPSSYHFHSVFTCPVSKE 346

Query: 541 ATTLPN 558
             T  N
Sbjct: 347 QATEEN 352


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -1

Query: 422 PIPESNNSCGELIAPAETTTSFLTFTAISRPPLFNK-TPLTMLVPGLKT 279
           PIP ++ S  +  +    TTS    T+ S PP  N  TP+T  VP   T
Sbjct: 262 PIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 310


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 446 RSSKCLRGPIPESNNSCGELIAPAETTTSFL 354
           + S+  R  I E NNS GE++   +T T++L
Sbjct: 259 KRSRVNRNRINELNNSLGEIVKQQDTLTTYL 289


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -2

Query: 484  FLRQANRL*LQCLGLPSACEVQFRRATTAVGS 389
            FL Q  R   +CLG PS+ EV   RA TA+G+
Sbjct: 2324 FLPQLQRTFAKCLGDPSS-EVIRSRAATALGT 2354


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 292 GTNIVSGVLLNKGGRDIAVNVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADL 471
           G     GV+    GR+  +  RK  + S    N   +L+    G R   +D N+  K DL
Sbjct: 429 GIETTGGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTKDNNLLGKFDL 488


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +1

Query: 292 GTNIVSGVLLNKGGRDIAVNVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADL 471
           G     GV+     R+  +  +K  V S  A N P +L+    G R   +D N+  K +L
Sbjct: 400 GIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERARTKDCNLLGKFEL 459


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 217 LSPIKDRKNLHVIKNAIATKIVFKPGTNIV 306
           L+P+  +K L+++  + AT  V  PG++IV
Sbjct: 518 LNPVFLKKFLNILSGSFATLAVSAPGSHIV 547


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 280 VFKPGTNIVSGVLLNKGGRDIAVNVRKEVVVSA 378
           +F  GT+I  G ++  GGR +AV    + V +A
Sbjct: 368 IFHAGTSIRDGNVVTNGGRVLAVEATGDSVEAA 400


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 424 PRKHLEDLNIEVKADLPVGENLQDHLFVPVFYTKPGDK 537
           P K++E L + +K    + E    +L +P F   P DK
Sbjct: 55  PEKYIEFLELRLKYLRGLAEESDPNLKLPSFLAPPNDK 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,064
Number of Sequences: 5004
Number of extensions: 61243
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)