Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30655
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 64 8e-11
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 62 3e-10
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 60 2e-09
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 54 2e-07
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 52 6e-07
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 52 6e-07
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 52 6e-07
06_03_0609 + 22710442-22713502,22713596-22713948 31 1.2
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889... 28 6.6
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 28 8.8
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 64.5 bits (150), Expect = 8e-11
Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 8/103 (7%)
Frame = +1
Query: 244 LHVIKNAIATKIVF-KPGTNIVS-GVLLN--KGGRDIAV---NVRKEVVVSAGAINSPQL 402
+ V A +IVF + GT V+ GVL + +GG +A R E+++SAGA+ SPQL
Sbjct: 222 IDVFLRARVARIVFSRKGTKPVARGVLYHDARGGSHMAYLNHGARNEIILSAGALGSPQL 281
Query: 403 LLLSGIGPRKHLEDLNIEVKADLP-VGENLQDHLFVPVFYTKP 528
L+LSG+GP HLE+ I + D P VG+ + D+ ++ P
Sbjct: 282 LMLSGVGPADHLEEFGISLVLDHPGVGQGMSDNPMNAIYVPSP 324
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 62.5 bits (145), Expect = 3e-10
Identities = 54/141 (38%), Positives = 72/141 (51%), Gaps = 16/141 (11%)
Frame = +1
Query: 169 FTTTKGGTRFSTA-----RAFLSPIKDRKNLHVIKNAIATKIVF-------KPGTNIVSG 312
F T GGT F A A L + NL V+ +A T+I+F KP T V
Sbjct: 214 FGTKVGGTIFDEAGYRHTAADLLAAGNHNNLRVLLHASVTRIIFNTEQEHRKPRTIGVEF 273
Query: 313 VLLNKGGRD--IAVNVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIE-VKADLPVGE 483
N G + + N E+++SAGAI SPQLLLLSGIGPRK L+ NI V + VG+
Sbjct: 274 KDENGGQQHAFLTRNRDSEIIISAGAIGSPQLLLLSGIGPRKELKKHNISVVLRNEHVGK 333
Query: 484 NLQDHLFVPVFY-TKPGDKKA 543
+ D+ +F TK K++
Sbjct: 334 GMSDNPMNSIFIPTKDAPKQS 354
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 60.1 bits (139), Expect = 2e-09
Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +1
Query: 355 RKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDHLFVPVFYTKP 528
+ EV+VSAG + SPQLL+LSG+GP+ HLE IEV D P VG+ + D+ VF P
Sbjct: 277 KNEVIVSAGTLGSPQLLMLSGVGPQAHLEAHGIEVIVDQPMVGQGVADNPMNSVFIPSP 335
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Frame = +1
Query: 361 EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDH 498
EV++SAG++ SPQLLLLSGIGP L L I V AD+P VG+++ D+
Sbjct: 301 EVILSAGSLGSPQLLLLSGIGPANDLTSLGIPVFADVPDVGKHMFDN 347
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 51.6 bits (118), Expect = 6e-07
Identities = 43/119 (36%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Frame = +1
Query: 190 TRFSTARAFLSPIKDRKNLHVIKNAIATKIVF-------KPGTNIVSGVLLNKGGRDIAV 348
T + A L D NL V+ +A +IVF KP V N G +
Sbjct: 212 TGYRHTAADLLAAGDPNNLRVLLHASVNRIVFNSQRGQLKPRATGVQFTDENGGLHQAFL 271
Query: 349 NVR--KEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKA-DLPVGENLQDHLFVPVF 516
N E++VSAGAI SPQLLLLSGIGP+ L I V + VG+ + D+ +F
Sbjct: 272 NSNCDSEIIVSAGAIGSPQLLLLSGIGPKNDLRSHKIPVVLHNKYVGKGMADNPMNSIF 330
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 361 EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDHLFVPVFYTKP 528
E+++SAGA+ SPQLL+LSG+GP HL I + + P VG+ + D+ ++ P
Sbjct: 275 EIILSAGAMGSPQLLMLSGVGPADHLRSFGITLVLNQPAVGQGMSDNPMNAIYVPSP 331
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 355 RKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDHLFVPVFYTKP 528
+ EV+V+AG + SPQLL+LSG+GPR LE I D P VG+ + D+ VF P
Sbjct: 272 KSEVIVTAGTLGSPQLLMLSGVGPRGELEKHGILPVLDQPRVGQGVADNPMNSVFVPSP 330
>06_03_0609 + 22710442-22713502,22713596-22713948
Length = 1137
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -1
Query: 467 SALTSMFRSSKCLRGPIPESNNSCGELIAPAETTTSFLTFTAISRPPLFNKTPLTML 297
S+L + S CL G IPES G + + F+ PPLFN + LT L
Sbjct: 316 SSLLYLRLSQNCLDGSIPES---LGHIPTLQTLMLTLNNFSGTIPPPLFNMSSLTFL 369
>01_07_0264 -
42388455-42388565,42388656-42388688,42388792-42388905,
42389011-42389100,42389173-42389268,42389363-42389404,
42389498-42389608,42392258-42392440,42392518-42392961
Length = 407
Score = 28.3 bits (60), Expect = 6.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -3
Query: 411 EQQQLWGVNSTSGNDNFFSYI 349
++Q+LWG N + D++F Y+
Sbjct: 91 DEQELWGPNVQTSQDDYFDYV 111
>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 340 IAVNVRKEVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLPVGENL 489
+AV +K++ SAG +NSP G+ P + + L + A LPVG+ +
Sbjct: 939 VAVPAQKQLKYSAGIVNSPS----KGV-PAFNKQHLKMVPMAQLPVGKKV 983
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,138,886
Number of Sequences: 37544
Number of extensions: 401281
Number of successful extensions: 1101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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