Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30655
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)                   29   5.1  
SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072)                  28   9.0  

>SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 596

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 163 KSFTTTKGGTRFSTARAFLSPIKDRKNLHVIKNAIATKIVFKPGTNIVSGVL 318
           K FTTTK G  F       S  KDRK    +K  IA+  V K  +++   V+
Sbjct: 5   KYFTTTKKGEIFELKAELNSDKKDRKK-EAVKKVIASMTVGKDVSSLFPDVV 55


>SB_34970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 294 TGLKNDFSGDSVLDDMEVLPVLDRAKES 211
           +GL    +GDS+ DD+E L VLD  +ES
Sbjct: 812 SGLIGFETGDSLADDLEELSVLDPVEES 839


>SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072)
          Length = 677

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 435 VLARSNSGEQQQLWGVNSTSGNDNFFSYIYSNIT 334
           V  RS+SG QQ ++  N   GN+N  + + SNI+
Sbjct: 330 VWGRSDSG-QQNIYKYNDKKGNNNIINNMNSNIS 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,712,997
Number of Sequences: 59808
Number of extensions: 454583
Number of successful extensions: 1216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)