Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30655
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   137   1e-34
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.0  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  137 bits (331), Expect = 1e-34
 Identities = 90/226 (39%), Positives = 126/226 (55%), Gaps = 6/226 (2%)
 Frame = +1

Query: 7   RGATKYHSKGGYLSVASDDNMHEIEDLIIKAAVELGLKNLTDCNGDSQIGVMKSFTTTKG 186
           R  TKYH  GG ++V            I+KAA E G     D +GD   G   + T ++ 
Sbjct: 200 RVGTKYHRSGGLMNVERFPYQPPFAWKILKAAEEAGFGVSEDLSGDRINGFTVAQTISRN 259

Query: 187 GTRFSTARAFLSPIKDRKNLHVIKNAIATKI--VFKPGTNIVSGVLLNKGGRDIAVNVRK 360
           G R S+ARAF++P ++R NLHVI NA  TK+  + K  T +   VL+N  GR   +  R+
Sbjct: 260 GVRLSSARAFITPFENRSNLHVIVNATVTKVRTLNKRATGV--NVLIN--GRRRIIFARR 315

Query: 361 EVVVSAGAINSPQLLLLSGIGPRKHLEDLNIEVKADLP-VGENLQDHLFVPVFYTKPGDK 537
           EV++SAG++N+PQLL+LSGIGP++HL  L I V  DLP VGENL +H    + ++   D 
Sbjct: 316 EVILSAGSVNTPQLLMLSGIGPKEHLRSLGIPVVVDLPGVGENLHNHQSFGMDFSLNED- 374

Query: 538 KATTLPNIISTFIEYFLHN-TGDLIDTSPHRV--IAFENTTDPNSP 666
                P    T ++ +L+N TG L  T   +V  I   N T P+ P
Sbjct: 375 ---FYPTFNQTNVDQYLYNQTGPLSSTGLAQVTGIWHSNLTTPDDP 417


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +1

Query: 10  GATKYHSKGGYLSVASDDNMHEIEDLIIKAAVELGLKN 123
           G+T ++ +     V+   +++++EDL  K +   G K+
Sbjct: 465 GSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKD 502


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +1

Query: 10  GATKYHSKGGYLSVASDDNMHEIEDLIIKAAVELGLKN 123
           G+T ++ +     V+   +++++EDL  K +   G K+
Sbjct: 465 GSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKD 502


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = +1

Query: 10  GATKYHSKGGYLSVASDDNMHEIEDLIIKAAVELGLKN 123
           G+T ++ +     V+   +++++EDL  K +   G K+
Sbjct: 465 GSTNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGYKD 502


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 673 DMQYHYLIFPSSSYNLLDM 729
           D+Q   LIF S ++N+LDM
Sbjct: 152 DVQECPLIFESWTHNVLDM 170


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 75  FVHIIVRSYTEITAFAVVFSRP 10
           F  IIV SYT   A  +V  RP
Sbjct: 646 FAMIIVASYTANLAAFLVLERP 667


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 76  IEDLIIKAAVELGLKNLTDCNGD 144
           ++D+    AVE G+   T C GD
Sbjct: 354 VQDISSPDAVEYGIIGPTTCMGD 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,477
Number of Sequences: 438
Number of extensions: 3757
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)