Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30654
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 48 1e-06
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 38 0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 37 0.002
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 35 0.013
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 35 0.013
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 34 0.022
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 33 0.030
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 31 0.16
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 31 0.21
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 30 0.28
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.28
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 30 0.36
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 29 0.48
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 29 0.48
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 29 0.84
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 29 0.84
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 1.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 1.5
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 1.5
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 27 1.9
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 1.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 1.9
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 1.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.9
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 2.6
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 2.6
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 2.6
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 4.5
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 4.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.5
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 4.5
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 26 4.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.5
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 4.5
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 5.9
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 5.9
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 5.9
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 5.9
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 5.9
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 5.9
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 7.8
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 7.8
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 7.8
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 25 7.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 7.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 7.8
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 25 7.8
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 48.0 bits (109), Expect = 1e-06
Identities = 47/192 (24%), Positives = 99/192 (51%)
Frame = +1
Query: 55 KQRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 234
+QR ++ R+++ A++++ +L+ +++ +K ++K E + +R+K K+Q
Sbjct: 553 EQRVLQAYREKV--AQQRQAKLLEEIEEENKRKQERELKKIREK------EKKRDK-KKQ 603
Query: 235 LEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKE 414
L+ K+ R E + L K QE E K E ++ E+ +K+Q+ + ++
Sbjct: 604 LKLAKEEERQRREAERLAEQAAQKALEAKRQE--EARKKREEQRLKREQEKKQQELERQK 661
Query: 415 LKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKKKLFEGDLEKL 594
+E+QKQ+ R K LKK EA K + ++ + E+R+ ++KL + + E+
Sbjct: 662 REEKQKQKEREKKLKK-QQQEADREKMAREQRLREEEEKRI-LEERKRREKLDKEEEERR 719
Query: 595 NKDFLEKVWQER 630
++ LEK +E+
Sbjct: 720 RRELLEKESEEK 731
Score = 33.1 bits (72), Expect = 0.039
Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 9/220 (4%)
Frame = +1
Query: 64 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTI----QKKSENFGLSNAQLERNKTKE 231
D EE + ++E E Q M++ + F Q+ + + AQ + K E
Sbjct: 515 DEEEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLE 574
Query: 232 QLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLK 411
++EEE K +K + + +K R K ++L KL E EERQ+R+ L
Sbjct: 575 EIEEENKRKQERELKKIREK----EKKRDKKKQL-----KLAKE----EERQRREAERLA 621
Query: 412 E-LKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKKKL----FE 576
E ++ + R + +K + + L + K Q + +R + + +KKL E
Sbjct: 622 EQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQE 681
Query: 577 GDLEKLNKDFLEKVWQERAEQFGGRQKARLPKWFGERPAR 696
D EK+ ++ + +E+ +++ +L K ER R
Sbjct: 682 ADREKMAREQRLREEEEKRILEERKRREKLDKEEEERRRR 721
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 38.3 bits (85), Expect = 0.001
Identities = 41/168 (24%), Positives = 79/168 (47%), Gaps = 6/168 (3%)
Frame = +1
Query: 58 QRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQ 234
+R+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K +
Sbjct: 570 KREAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKRE 628
Query: 235 LEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKR--QDYDL 408
EE+ K + K E K +++A+E + + E K + EE+ KR ++
Sbjct: 629 AEEKAKREAEEKAKREAEE-----KAKREAEEKAKREAE-ENAKREAEEKAKREAEENAK 682
Query: 409 KELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVA---SKYERRVDT 543
+E +E+ K++ A +K + P+I+ + + E VDT
Sbjct: 683 REAEEKVKRETEENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDT 730
Score = 35.5 bits (78), Expect = 0.007
Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Frame = +1
Query: 52 KKQRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTK 228
K +R+ EEK +R E + KR+A A ++A + ++K++ A+ E K K
Sbjct: 576 KAKREAEEKAKREAEEKAKREAEENAKREAEEKAKR-EAEEKAKREAEEKAKREAEEKAK 634
Query: 229 EQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDL 408
+ EE+ K + K E K +++A+E + + E K + EE KR+ +
Sbjct: 635 REAEEKAKREAEEKAKREAEE-----KAKREAEENAKREAE-EKAKREAEENAKREAEE- 687
Query: 409 KELKERQKQQLRHKALKKG 465
++K ++ + KA ++G
Sbjct: 688 -KVKRETEENAKRKAEEEG 705
Score = 33.5 bits (73), Expect = 0.030
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Frame = +1
Query: 58 QRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQ 234
+R EEK + E KR+A QA ++A + +K K E + + E N K +
Sbjct: 546 KRKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN-AKRE 604
Query: 235 LEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETE---KYDLEERQKR--QD 399
EE+ K + K E + + +KA+ E K E E K + EE+ KR ++
Sbjct: 605 AEEKAKREAEEKAK-REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEE 663
Query: 400 YDLKELKERQKQQLRHKALKK 462
+E +E+ K++ A ++
Sbjct: 664 NAKREAEEKAKREAEENAKRE 684
Score = 31.9 bits (69), Expect = 0.090
Identities = 26/110 (23%), Positives = 46/110 (41%)
Frame = +1
Query: 52 KKQRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 231
K +R+ EEK +R E KR+A +A ++A + +K + + + K
Sbjct: 648 KAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEEEGKR 707
Query: 232 QLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEE 381
+ ++ +I S PL +VD +Q E + K + EK E
Sbjct: 708 EADKNPEIKSS---APLASSEANVDTSKQTNATEPEVVDKTKVEKLKASE 754
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 37.1 bits (82), Expect = 0.002
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 5/202 (2%)
Frame = +1
Query: 52 KKQRDIEEKRQRLEEAEKKRQAML---QAMKDASKTGPNFTIQK-KSENFGLSNAQLERN 219
K Q ++E +R E+ ++ QA + K A + T+ + + ++ LS +R
Sbjct: 272 KSQEELELIAERKRESGRRLQAQAAIKRKEKAAERDRELATLTELQQQSLVLSRRAFQRA 331
Query: 220 KTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQD 399
+ E+E +++ ++ I D+ RQ+ E L+ + D+E+ +
Sbjct: 332 LEEAGFEDESQLNAQVKNVQAKIRRAQRDQQRQEESE-----GSLDVTEIDVEQAFPLLN 386
Query: 400 YDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYER-RVDTRSYDDKKKLFE 576
EL E +Q RH+ L K + K I+ A++ ER D R + +
Sbjct: 387 VPDAELDEAGLRQKRHQRLMKANYDARVRAKAEKAIEEAAEAERAEADERLRLENFSTWV 446
Query: 577 GDLEKLNKDFLEKVWQERAEQF 642
+ + +K LEK+ + + +F
Sbjct: 447 NEKRETHKILLEKISKNKRLKF 468
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 34.7 bits (76), Expect = 0.013
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = +1
Query: 76 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 252
++++LE K + LQ ++D KT + S + A LE + E ++EE K
Sbjct: 29 QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82
Query: 253 ISLSIRIKPLTIEGLSV-DKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQ 429
+ ++IK + EGLS+ KL K +E + I + +LE + + + + + LK
Sbjct: 83 VEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATF 142
Query: 430 KQ 435
K+
Sbjct: 143 KR 144
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 34.7 bits (76), Expect = 0.013
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +1
Query: 205 QLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEER 384
+L+R K ++Q E+EKK+ +I ++ L +KL ++ L E + E L E+
Sbjct: 97 RLKREKERQQREQEKKLREQEKIAAKKMKEL--EKLEKERIRLQEQQRRKEERDQKLREK 154
Query: 385 QKRQDYDLKELKERQKQQLR-HKALKKGLD 471
++ Q +++ +++QQL+ + KG++
Sbjct: 155 EEAQRLRQEQILNKERQQLKLNNFFTKGVE 184
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.022
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 70 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 249
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 250 KISL 261
K L
Sbjct: 196 KAML 199
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +3
Query: 315 TEGPGTLGVHRQTRDREIRSRREAKE---TGLRLKRAQRKTKAATEAQS-SQEGSRPRSA 482
TEG L + + RS+R+A E L L+R + K KA EA+ +++ S+ +
Sbjct: 4 TEGKNDLRAKLAEKIQTFRSQRKATEKVDRALLLQRRKEKAKARAEAKKLAKKESKAKQE 63
Query: 483 HRQAPAQNSSS 515
+ A +S
Sbjct: 64 SKVAAYDTGNS 74
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 33.5 bits (73), Expect = 0.030
Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = +1
Query: 58 QRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 237
++ + E +L+ ++K+ + D+ + +QK +S + E+ + ++
Sbjct: 70 KKSLSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKM 129
Query: 238 EEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKEL 417
EE S+ + +E LS Q++Q + E K + E DL+E ++ ++ K
Sbjct: 130 EELTVESMEVVRLTRQVETLSTQYSIQRSQWVRE-DEKKKKEIQDLKELYEKSEHGAKNW 188
Query: 418 -KERQKQQLRHKALKKGLD 471
+ER+ Q + + K LD
Sbjct: 189 ERERETFQNQVSQMSKQLD 207
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 327 GTLGVHRQTRDREIRSRREAKETGLRLKRAQRKTKAATEAQSSQE 461
GTLG +Q +RE +S R+ K L K A+R+ + E + ++
Sbjct: 82 GTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEK 126
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 30.7 bits (66), Expect = 0.21
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Frame = +1
Query: 211 ERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLET-EKYDLEERQ 387
ER KE L ++ + L E LS+ +L K Q+++E K+ E+ E R
Sbjct: 20 ERLLKKENLPANIRVEHERALLGLQ-EQLSMAQLEHKKQKIFERYKKVRFFERKKAERRI 78
Query: 388 KRQDYDLK-ELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKK 564
K+ + LK E + +K++ K+++K ++PP + S Y
Sbjct: 79 KQLEKSLKDETMDDEKRKQCEKSMRKCQIDLMYIKEYPPLTKYVSLYA------------ 126
Query: 565 KLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLP 669
EG E+ ++ ++W E E+F +K ++P
Sbjct: 127 ---EGTSEQ-TEETRNRIWAEMEERFNSGRKHKIP 157
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = +1
Query: 316 QKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLD 471
++AQE++ ++ L E D+E+ Q Q + L+E ++++LRH L+K LD
Sbjct: 906 KRAQEMYANVL-LGVE--DMEDDQFSQRCERMALREAERRKLRHGKLQKHLD 954
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 64 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 231
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A L + K K
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220
Query: 232 QLEEEKKISLSIRIKPLT 285
+ +KK S I+ T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/72 (26%), Positives = 42/72 (58%)
Frame = +1
Query: 220 KTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQD 399
KT E+LE+E + ++S +++ L G D +A +L + + YD E++QK ++
Sbjct: 168 KTAEELEKEDREAMSAKLQELIRRGTPADLA--EANKLMKVMAG-----YDTEQKQKYKE 220
Query: 400 YDLKELKERQKQ 435
+ L +L++ +++
Sbjct: 221 HVLVDLEKVKRK 232
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +1
Query: 55 KQRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQL--ERNKTK 228
KQ++++EKR E K ++ L+A K+ + I K+ N L E +
Sbjct: 521 KQKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLIDEESDAL 580
Query: 229 EQLEEE 246
+LEE+
Sbjct: 581 SELEED 586
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 29.5 bits (63), Expect = 0.48
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Frame = +1
Query: 349 KLETEKYDL---EERQKRQDYDLKELKERQKQQLRHKALKKG------LDPEALTGKHPP 501
KLETEK + EE+++++ D K+ KE K + K ++ LTG+ PP
Sbjct: 173 KLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPP 232
Query: 502 K 504
K
Sbjct: 233 K 233
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 28.7 bits (61), Expect = 0.84
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Frame = +1
Query: 52 KKQRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 231
K + + EK+ + K A ++A + ASK+G T S+N L + +R + K
Sbjct: 111 KVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKR 170
Query: 232 QLEEEKKIS---LSIRIKPLTIEGLS---VDKLRQKAQELWECI 345
E IS L I T +G++ ++ L+ + ++ EC+
Sbjct: 171 MRENIWAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 28.7 bits (61), Expect = 0.84
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 664 VAPFACRRTVRPSLATPSRGSPCSVSLGHPRTVSFC 557
V+PF R + P A P R P + +GH V++C
Sbjct: 1236 VSPFK-ERLLSPIFAKPLRALPFHIQIGHIDAVNYC 1270
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 88 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 249
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.9 bits (59), Expect = 1.5
Identities = 30/127 (23%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Frame = +1
Query: 52 KKQRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKS-ENFGLSNAQLERNKTK 228
K Q +E+ Q + +K + + + A+K + T +KK+ +++ ++E + K
Sbjct: 385 KLQAHLEKFEQTERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIEE-QLK 443
Query: 229 EQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECI--VKLETEKYDLEERQKRQDY 402
L +EKK+ S IE LS +K + I KL +E DL R ++++
Sbjct: 444 FLLNKEKKLKKS-------IEALSFEKSEAENSLSSHDIDSQKLNSEIADLSLRLQQEEL 496
Query: 403 DLKELKE 423
L ++++
Sbjct: 497 SLDDIRK 503
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 181 ENFGLSNAQLERNKT-KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLE 357
EN L + L+R K E+L + + + + + +T E L QKA E E I KLE
Sbjct: 366 ENTSLESQLLKREKQLSEELAKLRSTNAQLTDR-ITQESKKASFLEQKASEQEEVIRKLE 424
Query: 358 TEKYDLE 378
+ D++
Sbjct: 425 KDLADVD 431
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/82 (23%), Positives = 39/82 (47%)
Frame = +1
Query: 313 RQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGK 492
++K++++ E + K E +L+ + LKE ++QK+ L+ K + D L+ K
Sbjct: 19 KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEAD---LSQK 75
Query: 493 HPPKIQVASKYERRVDTRSYDD 558
H + Q K + + +D
Sbjct: 76 HATERQKLDKGDEETNETQQED 97
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Frame = +1
Query: 304 DKLRQKAQELWECIVKLETEKYDLEE----RQKRQDYDLKELKERQKQQLRHKALKKGLD 471
+K+ +K ++ + I K E +D E+ + KR+ L++ ++++K +L + K
Sbjct: 64 EKVLKKWKKRKKLIAKGLLEPFDAEDNEAKKMKREKEILRQQRQKRKSELTQLSQKVKEK 123
Query: 472 PEALTGKHPPKIQVASKYERRVDTRSYDD---KKKLFEGDLEKLN 597
+ + K +I + E D ++ D+ ++K +G+L++ N
Sbjct: 124 FKKMRKKPARRIVTIANDEEEEDDQTMDEDAFERKSMQGELKERN 168
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 76 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 246
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 352 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPP 501
LE ++YD+EE D DL+EL ++ + + ++ ++ +A G+ P
Sbjct: 84 LELDRYDIEELD--DDNDLEELDIGARRAVDARLRRRDIELDAAAGRTKP 131
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +1
Query: 58 QRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQL 237
+RD + K+ +++ EK Q + + +S + K ++ + E N +EQ+
Sbjct: 449 ERDFQNKK--IKDFEKIEQDLRACLNSSSN-------ELKEKSALIDKKDQELNNLREQI 499
Query: 238 EEEKKISLSIRIKPLTIEGLSVDKLRQKAQ-ELWE 339
+E+KK+S S + +++ L D L +K + E++E
Sbjct: 500 KEQKKVSESTQ---SSLQSLQRDILNEKKKHEVYE 531
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -1
Query: 631 PSLATPSRGSPCSVSLGHPRTVSFCRRRIVCRHASR 524
PS+++ S S+SL + +SFC+ + CR+ R
Sbjct: 328 PSVSSSLSSSVASLSLQNSNILSFCKDQHGCRYLQR 363
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 235 LEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKE 414
+EE +I +S+ +KPL I K A + V E + Y+ ++Q++++ + K+
Sbjct: 13 IEETNRIRISLGLKPLDISEEKPQKELSDA-SVKSSYVDQEQQAYENWKKQEQEEINRKK 71
Query: 415 LKERQK--QQLRHK 450
+E + ++LR K
Sbjct: 72 EEELKSKFEKLRQK 85
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 154 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 297
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 306 QTPTEGPGTLGVHRQTRDREIRSRREAK 389
++ T+G GT V + TR + RSRR+ +
Sbjct: 203 ESSTKGNGTFTVSKTTRKNQPRSRRDPR 230
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 4.5
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Frame = +1
Query: 226 KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWEC--------IVKLETEK--YDL 375
+EQ E +K+ I+ + ++G V+K ++ E E K+E K Y L
Sbjct: 15 EEQRNEIEKLKNLTGIEEVHVDGAKVNKRKRTFDEQSEITKDYIEYDFSKIEDTKGGYLL 74
Query: 376 EE------RQKRQDYDLKELKERQKQQLRHKALKKGLDPE 477
EE R+K + +L+E +ERQK +LR L LDPE
Sbjct: 75 EEKKVEDLREKPAERELREQEERQK-KLRLAPL--NLDPE 111
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -1
Query: 643 RTVRPSLATPSRGSPCSVSLGHPRTVSFCRRR 548
R + P P R P ++ +GH +++C R
Sbjct: 1294 RLLSPIFGKPLRALPFTIQIGHIDAITYCLHR 1325
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/74 (21%), Positives = 38/74 (51%)
Frame = +1
Query: 52 KKQRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 231
K + I EKR LEE +++ + + + + K ++++++ E + + +LE K +
Sbjct: 60 KTRTVIIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRR 116
Query: 232 QLEEEKKISLSIRI 273
+ ++ K S R+
Sbjct: 117 KQKKVNKEKNSPRL 130
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +1
Query: 52 KKQRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE 231
KK IE + + E EKK A ++ + + F IQK ++ L+ +L K+
Sbjct: 44 KKYDQIESEYKTNIENEKK--AFIKDVSQVQQKIKEFEIQKANQIKQLNEEKLSIEARKQ 101
Query: 232 QLEEE 246
QLE E
Sbjct: 102 QLEIE 106
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -1
Query: 340 TPRVPGPSVGVCRRRDPRWSAA*CGWTGRSSSPLPAAPWSC 218
TP VP S P S + TG SSSPLP+ SC
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTS---STGTSSSPLPSTSTSC 339
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 26.2 bits (55), Expect = 4.5
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +1
Query: 52 KKQRDIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLER---NK 222
K QR+ E RQ+ EE ++++QAM +A + A+ T ++ SE LS + +R K
Sbjct: 49 KLQRE-RELRQKYEEEQRRQQAM-EAKRIAAST------RQTSERPPLSAEEAKRIREVK 100
Query: 223 TKEQLEEEK 249
K++LE +K
Sbjct: 101 EKDRLESKK 109
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/82 (19%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 208 LERNKTKEQLEEEK----KISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYD- 372
++ ++K+Q+++ + K ++ P ++ D + + E + ++E EK +
Sbjct: 113 MQERQSKKQIQDRESDYQKQRYDRQLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEER 172
Query: 373 ---LEERQKRQDYDLKELKERQ 429
+E Q+R++ LKE++E +
Sbjct: 173 RVHMELNQRRREGTLKEVEEEE 194
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 367 YDLEERQKRQDYDLKELKERQKQQLRHKALKK 462
Y+ E+R KRQ+ E + R+K++ R A +K
Sbjct: 242 YEREQRAKRQEQFRLERENREKEKRRIAAQRK 273
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 70 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 243
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 244 EKKI 255
+++I
Sbjct: 192 DEEI 195
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +1
Query: 166 IQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRI-KPLTIEGLSVDKLRQKAQELWEC 342
++K+ NA++E+ + +EEE++ I I + E + KL ++ +E+ E
Sbjct: 25 LEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEV-EK 83
Query: 343 IVKLETEKYDLEERQKRQDYDLKELKERQKQ 435
I++ + E+ + QK + +L+ + K+
Sbjct: 84 ILR-DEERIKKRKIQKNRAANLQRTLQPPKR 113
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 337 ECIVKLETEKYDLEERQKRQDYDLKELKERQKQ 435
E + KLE E+Y+ + + + +K LK+ Q +
Sbjct: 391 EAMTKLEEERYEFDRHIEATSWTIKSLKKIQNR 423
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +3
Query: 378 REAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRR 557
R+ KE K A+ +A EA + E R H Q AQ + + A R R
Sbjct: 776 RQRKEI-FEQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKERE 834
Query: 558 QKE 566
Q+E
Sbjct: 835 QRE 837
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 409 KELKERQKQQLRHKALKKGLDPEALTG 489
KE+K+RQ+ Q K +++GL +G
Sbjct: 461 KEIKDRQRTQKEEKVVQRGLTQVLTSG 487
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 547 SYDDKKKLFEGDLEKLNKDFLEK 615
S DKKK+ +EK++KD L K
Sbjct: 120 SLKDKKKMIVSGIEKVHKDKLSK 142
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 182 SLFFWMVKLGPVLLASFMAWSIAW 111
SL+FW L P +F++W + +
Sbjct: 111 SLYFWTAYLSPPKYRAFLSWFLGY 134
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 298 SVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRH 447
S++ +R + EC ++ + +EER K D + + E QK++L H
Sbjct: 21 SLNPIRSSLIKQEECYKTVDGDDNPIEERIKACDAGI-QTSEEQKKELEH 69
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 7.8
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +1
Query: 100 EKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKP 279
EK +Q Q K +K + Q N +N LE ++ EEE++I ++ R K
Sbjct: 327 EKNQQRREQQDKGENKKRQDDVDQATDNN---TNTILEDDEKDNDEEEEEEI-VNAREKN 382
Query: 280 LTIEGLSVDKLRQKAQELWECIVKLE 357
L + + + +K E W+ +V+ E
Sbjct: 383 LLNQQFNWTAIVKKLGENWDQLVRFE 408
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 7.8
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +1
Query: 100 EKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKP 279
EK +Q Q K +K + Q N +N LE ++ EEE++I ++ R K
Sbjct: 327 EKNQQRREQQDKGENKKRQDDVDQATDNN---TNTILEDDEKDNDEEEEEEI-VNAREKN 382
Query: 280 LTIEGLSVDKLRQKAQELWECIVKLE 357
L + + + +K E W+ +V+ E
Sbjct: 383 LLNQQFNWTAIVKKLGENWDQLVRFE 408
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 298 SVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKER 426
+V++L+ K +E + + K + EK D EE+ K++ KE+
Sbjct: 208 TVEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQKKSSKKEK 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.130 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,185
Number of Sequences: 5004
Number of extensions: 35948
Number of successful extensions: 230
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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