Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30653
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    28   1.2  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    25   8.5  

>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = -1

Query: 657 KSLIN*SYT*NLPTYRKRKSNSL 589
           KSLIN  +T N PT +KRKSN+L
Sbjct: 520 KSLINTDHTAN-PTIKKRKSNTL 541


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 658 KVPYKLVLHVEPSNIQKKKK*LLKMFSQLMLI 563
           K PY L+L  +PS+ +K    + KM ++ + I
Sbjct: 81  KAPYTLILDKQPSSTEKNPSCINKMTNRAIYI 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,699
Number of Sequences: 5004
Number of extensions: 56294
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)