Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30653
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9474| Best HMM Match : EGF (HMM E-Value=2e-08)                      32   0.56 
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                29   3.9  
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14)               28   9.1  

>SB_9474| Best HMM Match : EGF (HMM E-Value=2e-08)
          Length = 237

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 730 KGP*TRQ*LSLIL*FTYHYEVEKPKVPYKLVLHVEPSNIQKKKK 599
           KG  T + L+ +  + YH   +KPKVP++L   + P  I+K ++
Sbjct: 36  KGDSTHEYLTSLREYFYHKRSKKPKVPHQLARILLPQKIKKSQR 79


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 190 SFNTSSARRLVDILPYITCENTRLCVAIQE*DGGTELLGPSTQGS 56
           S NTS +   +D+ P ITC  T  C      +G   ++G +T GS
Sbjct: 144 STNTSGSSTTIDVCPIITCTTTSSCCTTF--NGSPTIIG-TTSGS 185


>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
 Frame = +1

Query: 409 SLVAGLSFTSVYMFNCVLIFGLFDLLLRFNIRFXXXXXXXXXXXDENSIKLQLTSVAKTS 588
           +L A L F ++ M   +  +    L +R + R             E  + ++   + +T 
Sbjct: 299 TLFATLVFIALPMLLIIFCYTAVSLRVRKHRRNVTSSLNVRNQRSELRLSVEEVKITRTL 358

Query: 589 *GVTFSFSVCWKVLRVR-LVYKGLSAFLPHNDK*IIKLMIITASFTAPYV 735
             + F+F +CW  + V  L+ + +   +P     ++  ++  +S   P+V
Sbjct: 359 FTLVFAFLICWLPVSVALLIVRAIVGSVPIIAARVLNCLVALSSACTPFV 408


>SB_52045| Best HMM Match : DUF1605 (HMM E-Value=3.8e-14)
          Length = 812

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 613 VCWKVLRVRLVYKGLSAFLPHNDK*IIKLMIITASF 720
           +C KV  V L+Y GLS + PHN   + + ++   SF
Sbjct: 216 LCQKV--VALLYFGLSLYYPHNSSVLCQKVVALPSF 249



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 613 VCWKVLRVRLVYKGLSAFLPHNDK*IIKLMIITASF 720
           +C KV  V L+Y GLS + PHN   + + ++   SF
Sbjct: 331 LCQKV--VALLYFGLSLYYPHNSSVLCQKVVALLSF 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,171,875
Number of Sequences: 59808
Number of extensions: 407308
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)