Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30652
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   170   4e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   100   1e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    88   3e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    81   5e-17
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    62   2e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    48   5e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    56   9e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    54   5e-09
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   1.5  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   2.0  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    24   4.6  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    24   6.1  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    24   6.1  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    23   8.1  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  170 bits (414), Expect = 4e-44
 Identities = 79/91 (86%), Positives = 83/91 (91%)
 Frame = -3

Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
           LEKSYELPDGQVITIGNERFR PEALFQPS LG+E+ GIHE  YNSIMKCDVDIRKDLY 
Sbjct: 236 LEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYG 295

Query: 95  NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
           N VMSGGTTMYPGIADRMQKEI ALAPS++K
Sbjct: 296 NVVMSGGTTMYPGIADRMQKEIQALAPSSMK 326


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 99.5 bits (237), Expect = 1e-22
 Identities = 43/85 (50%), Positives = 61/85 (71%)
 Frame = -3

Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
           L ++Y LPDG+VI +G+ER+ CPE LFQP  +G E  G+ E ++++I   DVDIRK LY 
Sbjct: 236 LMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYR 295

Query: 95  NTVMSGGTTMYPGIADRMQKEITAL 21
             V+SGG++MY G+  R++KEI  L
Sbjct: 296 AIVLSGGSSMYAGLPSRLEKEIKQL 320


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 88.2 bits (209), Expect = 3e-19
 Identities = 37/87 (42%), Positives = 56/87 (64%)
 Frame = -3

Query: 278 PLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLY 99
           P   +Y+LPD Q IT+G E F  PE LF P  +G E+ G+H  ++ SI+  D+D+R  LY
Sbjct: 240 PQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLY 299

Query: 98  ANTVMSGGTTMYPGIADRMQKEITALA 18
           +N V+SGG+T+  G  +R   E+ A++
Sbjct: 300 SNIVLSGGSTLLRGFGERFISELRAIS 326


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 80.6 bits (190), Expect = 5e-17
 Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 9/93 (9%)
 Frame = -3

Query: 269 KSYELPDGQVITIGNERFRCPEALFQPSFLGMESC---------GIHETVYNSIMKCDVD 117
           K +E PDG     G ERFR  E LF PSF    S          G+HE VY SI+ CD +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338

Query: 116 IRKDLYANTVMSGGTTMYPGIADRMQKEITALA 18
           +R  L  N V++GGT++ PG+++R+Q E+  LA
Sbjct: 339 LRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLA 371


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 61.7 bits (143), Expect = 2e-11
 Identities = 30/78 (38%), Positives = 42/78 (53%)
 Frame = -3

Query: 245 QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTM 66
           QV+ + NERF  PE LF PS + +   GI E V  S+     +I+  L  N V  GG   
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331

Query: 65  YPGIADRMQKEITALAPS 12
           +PG   R+  E+ +LAP+
Sbjct: 332 FPGFHKRLSSELRSLAPA 349


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 48.0 bits (109), Expect(2) = 5e-11
 Identities = 21/52 (40%), Positives = 32/52 (61%)
 Frame = -3

Query: 164 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPST 9
           GI +   N I +CDVDIR  L  N ++ GGT++  G + R+Q E++ L P +
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS 377



 Score = 32.7 bits (71), Expect(2) = 5e-11
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 272 EKSYELPDGQVITIGNERFRCPEALFQP 189
           E  +E PDG  +  G ER++ PE LF P
Sbjct: 261 ESEFEFPDGSRMMFGAERYQIPEHLFVP 288


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 56.4 bits (130), Expect = 9e-10
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -3

Query: 239 ITIGNERFRCPEALFQPSFLGMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 63
           I +G ERF  PE  F P     +    + E V N +    +D+RK LY N V+SGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339

Query: 62  PGIADRMQKEITALAPSTI 6
               +R+Q+++  +    I
Sbjct: 340 KNFGNRLQRDLKRIVDERI 358


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 54.0 bits (124), Expect = 5e-09
 Identities = 21/70 (30%), Positives = 45/70 (64%)
 Frame = -3

Query: 224 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 45
           E+ R PE +F PS +G++  GI E + + + +  ++ ++ L +N +++GG    PG+  R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653

Query: 44  MQKEITALAP 15
           +++E+T++ P
Sbjct: 654 IKRELTSIMP 663


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 110 KDLYANTVMSGGTTMYPGIADRMQKEI 30
           K+LY++ ++ GG   +PG A  +++ I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERI 553


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 159 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 31
           PR+ V      R+R P  P  + R V      PR RRQ  +G+
Sbjct: 41  PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 116 IRKDLYANTVMSGGTTMYPGIADRMQKEI 30
           I   LY++   S  T  + GI DR++K +
Sbjct: 533 IYSSLYSSLNSSNSTVSFSGIFDRVEKSV 561


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 64  YMVVPPDMTVLAYRSLRMSTSHFMMELYTVSW 159
           ++ +     VL  R + + T+H +  LYT  W
Sbjct: 15  FLPISISSAVLIEREINVPTTHVLQTLYTRFW 46


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 79  PDMTVLAYRSLRMSTSHFMMELYTVSWMPHDSIPRKEGWKRASGQ-RNLSLPM 234
           P +  L++  LR   +  +++  + + +    IPR E WKRA+   +  S+P+
Sbjct: 172 PGLIPLSFIQLRDLKTGAVIKDVSEAVLRISCIPRVEDWKRAAADYKKSSIPL 224


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 120 DVALHDGVVHGLVDAARFHTQEGRLEESLGTTEPLVTDG 236
           D +++D  V  +V  A+   Q  + +ESL   + L+ DG
Sbjct: 492 DKSMNDYYVKNMVRKAQVLEQLEKYQESLNIWKDLIADG 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,648
Number of Sequences: 5004
Number of extensions: 23546
Number of successful extensions: 91
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)