Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30652
(313 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 186 2e-48
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 186 2e-48
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 186 2e-48
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 186 2e-48
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 186 2e-48
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 186 2e-48
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 186 4e-48
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 186 4e-48
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 186 4e-48
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 180 2e-46
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 172 4e-44
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 97 2e-21
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 95 1e-20
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 81 2e-16
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 69 9e-13
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 69 9e-13
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 64 2e-11
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 50 3e-07
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 42 7e-05
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 29 0.68
U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box... 27 3.6
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 3.6
Z47070-4|CAA87342.1| 363|Caenorhabditis elegans Hypothetical pr... 26 4.8
U67948-4|AAM51500.1| 688|Caenorhabditis elegans Hypothetical pr... 26 6.4
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr... 26 6.4
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 25 8.4
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 25 8.4
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 25 8.4
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 25 8.4
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 186 bits (454), Expect = 2e-48
Identities = 85/91 (93%), Positives = 89/91 (97%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYA
Sbjct: 237 LEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYA 296
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
NTV+SGGTTMYPGIADRMQKEITALAPST+K
Sbjct: 297 NTVLSGGTTMYPGIADRMQKEITALAPSTMK 327
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 186 bits (454), Expect = 2e-48
Identities = 85/91 (93%), Positives = 89/91 (97%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYA
Sbjct: 237 LEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYA 296
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
NTV+SGGTTMYPGIADRMQKEITALAPST+K
Sbjct: 297 NTVLSGGTTMYPGIADRMQKEITALAPSTMK 327
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 186 bits (454), Expect = 2e-48
Identities = 85/91 (93%), Positives = 89/91 (97%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYA
Sbjct: 237 LEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYA 296
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
NTV+SGGTTMYPGIADRMQKEITALAPST+K
Sbjct: 297 NTVLSGGTTMYPGIADRMQKEITALAPSTMK 327
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 186 bits (454), Expect = 2e-48
Identities = 85/91 (93%), Positives = 89/91 (97%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYA
Sbjct: 193 LEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYA 252
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
NTV+SGGTTMYPGIADRMQKEITALAPST+K
Sbjct: 253 NTVLSGGTTMYPGIADRMQKEITALAPSTMK 283
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 186 bits (454), Expect = 2e-48
Identities = 85/91 (93%), Positives = 89/91 (97%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYA
Sbjct: 223 LEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYA 282
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
NTV+SGGTTMYPGIADRMQKEITALAPST+K
Sbjct: 283 NTVLSGGTTMYPGIADRMQKEITALAPSTMK 313
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 186 bits (454), Expect = 2e-48
Identities = 85/91 (93%), Positives = 89/91 (97%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVIT+GNERFRCPEALFQPSFLGMES GIHET YNSIMKCD+DIRKDLYA
Sbjct: 237 LEKSYELPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYA 296
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
NTV+SGGTTMYPGIADRMQKEITALAPST+K
Sbjct: 297 NTVLSGGTTMYPGIADRMQKEITALAPSTMK 327
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 186 bits (452), Expect = 4e-48
Identities = 84/91 (92%), Positives = 89/91 (97%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVIT+GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCD+DIRKDLYA
Sbjct: 237 LEKSYELPDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYA 296
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
NTV+SGGTTMYPGIADRMQKEITALAPST+K
Sbjct: 297 NTVLSGGTTMYPGIADRMQKEITALAPSTMK 327
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 186 bits (452), Expect = 4e-48
Identities = 84/91 (92%), Positives = 89/91 (97%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVIT+GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCD+DIRKDLYA
Sbjct: 237 LEKSYELPDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYA 296
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
NTV+SGGTTMYPGIADRMQKEITALAPST+K
Sbjct: 297 NTVLSGGTTMYPGIADRMQKEITALAPSTMK 327
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 186 bits (452), Expect = 4e-48
Identities = 84/91 (92%), Positives = 89/91 (97%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVIT+GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCD+DIRKDLYA
Sbjct: 237 LEKSYELPDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYA 296
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
NTV+SGGTTMYPGIADRMQKEITALAPST+K
Sbjct: 297 NTVLSGGTTMYPGIADRMQKEITALAPSTMK 327
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 180 bits (438), Expect = 2e-46
Identities = 81/88 (92%), Positives = 86/88 (97%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVIT+GNERFRCPEA+FQPSFLGMES GIHET YNSIMKCD+DIRKDLYA
Sbjct: 237 LEKSYELPDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYA 296
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPS 12
NTV+SGGTTMYPGIADRMQKEITALAP+
Sbjct: 297 NTVLSGGTTMYPGIADRMQKEITALAPT 324
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 172 bits (419), Expect = 4e-44
Identities = 78/91 (85%), Positives = 84/91 (92%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
LEKSYELPDGQVITIGNERFRCPE LFQP+F+GME GIHET Y SIMKCDVDIRKDLYA
Sbjct: 236 LEKSYELPDGQVITIGNERFRCPEVLFQPAFIGMEGAGIHETTYQSIMKCDVDIRKDLYA 295
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
NTV+SGGT+M+PGIADRMQKEI LAPST+K
Sbjct: 296 NTVLSGGTSMFPGIADRMQKEIQHLAPSTMK 326
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 97.5 bits (232), Expect = 2e-21
Identities = 41/85 (48%), Positives = 56/85 (65%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
L + Y LPDG+VI +G ERF PE LFQP + +E G+ E ++ I D+D R D Y
Sbjct: 240 LSQQYTLPDGRVIRLGGERFEAPEILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYK 299
Query: 95 NTVMSGGTTMYPGIADRMQKEITAL 21
+ V+SGGTTMYPG+ R++KE+ L
Sbjct: 300 HIVLSGGTTMYPGLPSRLEKELKQL 324
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 94.7 bits (225), Expect = 1e-20
Identities = 43/88 (48%), Positives = 58/88 (65%)
Frame = -3
Query: 275 LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA 96
++ SY LPD I I N FR PE LF+P +G E G+ V SIMKCDVD+R+ LY+
Sbjct: 235 VKSSYALPDTTKIEISNSLFRAPEVLFKPDLIGTEWPGMAHVVNQSIMKCDVDLRQTLYS 294
Query: 95 NTVMSGGTTMYPGIADRMQKEITALAPS 12
N V+SGGTT++ G DR+ E+ +AP+
Sbjct: 295 NIVLSGGTTLFKGFGDRLLGEMRKIAPA 322
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 80.6 bits (190), Expect = 2e-16
Identities = 29/76 (38%), Positives = 55/76 (72%)
Frame = -3
Query: 233 IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 54
I N RF C E LF+P G+++ G+H+ ++ +I++C +D R+ LY N ++GG ++ PGI
Sbjct: 428 IDNSRFLCTEGLFKPKKWGLDTKGLHQLIHEAILQCPIDSRRTLYRNIYLAGGASLMPGI 487
Query: 53 ADRMQKEITALAPSTI 6
A+++++E++ + P+TI
Sbjct: 488 AEKLEQELSTVVPNTI 503
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 68.5 bits (160), Expect = 9e-13
Identities = 28/76 (36%), Positives = 48/76 (63%)
Frame = -3
Query: 239 ITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYP 60
I +G ERF PE LF PS + ++ CG+ E V SI +C +R L N ++ GG++ +P
Sbjct: 263 IHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFP 322
Query: 59 GIADRMQKEITALAPS 12
G +R+++E+ ++ P+
Sbjct: 323 GFRERLEREVRSMLPA 338
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 68.5 bits (160), Expect = 9e-13
Identities = 28/76 (36%), Positives = 48/76 (63%)
Frame = -3
Query: 239 ITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYP 60
I +G ERF PE LF PS + ++ CG+ E V SI +C +R L N ++ GG++ +P
Sbjct: 263 IHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGGSSCFP 322
Query: 59 GIADRMQKEITALAPS 12
G +R+++E+ ++ P+
Sbjct: 323 GFRERLEREVRSMLPA 338
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 64.1 bits (149), Expect = 2e-11
Identities = 28/80 (35%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = -3
Query: 239 ITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMY 63
+ +G ERF PE F P F E + I +T+ I +C +D+R+ LY N V+SGG+TM+
Sbjct: 276 VDVGYERFLGPEIFFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMF 335
Query: 62 PGIADRMQKEITALAPSTIK 3
A ++Q+++ L+ ++
Sbjct: 336 KDFARKLQRDVKRLSDGRLQ 355
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 50.0 bits (114), Expect = 3e-07
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Frame = -3
Query: 263 YELPDGQVITIGNERFRCPEALFQPSFLGMES-----CGIHETVYNSIMKCDVDIRKDLY 99
Y P+G G ER + PE LF +L E + + S D+DIR L+
Sbjct: 293 YAFPNGYTKEFGAERIKLPECLFDLGYLKAEGKKDGLMTVAQMAAASANLADIDIRPTLF 352
Query: 98 ANTVMSGGTTMYPGIADRMQKEITALAPSTIK 3
+N ++GG ++ G +R+ + P TIK
Sbjct: 353 SNVTVTGGNSLILGFTERLNYALATKCPPTIK 384
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 42.3 bits (95), Expect = 7e-05
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = -3
Query: 149 VYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL 21
++ + KC +D+RK L+ N +++GG + PG+ R+++EI +
Sbjct: 194 LHKLVSKCPIDLRKKLFPNILLTGGVSTIPGLMKRLEQEIQVI 236
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 29.1 bits (62), Expect = 0.68
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = -2
Query: 162 HPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGDHRPR 19
HP + HH+ H PV HR R H Q A RPR
Sbjct: 769 HPHHQQMPHHQPHLHHAHHPVHPHRGPRASHSQHLQHGQYAHHTQRPR 816
>U50072-5|AAA93452.2| 351|Caenorhabditis elegans Pax (paired box)
transcriptionfactor protein 2 protein.
Length = 351
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 144 VHGLVDAARFHTQEGRL--EESLGTTEPLVTDGDHLTVRKLVGLLEGG 281
V G V + T E L + G +PL++DG H V +L G+ G
Sbjct: 58 VSGTVSLPKAETVEPDLWIKSFKGNEDPLLSDGSHTGVNQLGGVFVNG 105
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/79 (25%), Positives = 24/79 (30%)
Frame = -2
Query: 243 GDHHR*REVPLSRGSLPAFLPGYGIVRHPRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHV 64
G+HH P G +G H HHE P H H +HH
Sbjct: 407 GEHHGTHHSPAHHGEHGTHHGHHG-EHHHAPAHHGHHESHGHGHHSPAH-HGHHGEHHHA 464
Query: 63 PRYRRQDAEGDHRPRALDH 7
P + E H P H
Sbjct: 465 PAHHGHHGEHHHAPAHHGH 483
>Z47070-4|CAA87342.1| 363|Caenorhabditis elegans Hypothetical
protein T09B9.5 protein.
Length = 363
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 40 CILSAIPGYMVVPPDM 87
C+LSA+P Y +VPP +
Sbjct: 300 CMLSALPEYSLVPPQV 315
>U67948-4|AAM51500.1| 688|Caenorhabditis elegans Hypothetical
protein M02E1.1b protein.
Length = 688
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 102 VRQHRHVRWYHHVPRYRRQDAEGDHRP 22
V +R V WY PRYR G +RP
Sbjct: 307 VMSNRPVYWYMGHPRYRLLANSGRYRP 333
>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical
protein M02E1.1a protein.
Length = 1077
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 102 VRQHRHVRWYHHVPRYRRQDAEGDHRP 22
V +R V WY PRYR G +RP
Sbjct: 307 VMSNRPVYWYMGHPRYRLLANSGRYRP 333
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 233 IGNERFRCPEALFQPSF-LGMESCGIHETVYNSIMKCDVDIRKD 105
+GN F C E F M CG+ + N I+ C +++ K+
Sbjct: 188 VGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKN 231
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 233 IGNERFRCPEALFQPSF-LGMESCGIHETVYNSIMKCDVDIRKD 105
+GN F C E F M CG+ + N I+ C +++ K+
Sbjct: 188 VGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKN 231
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 233 IGNERFRCPEALFQPSF-LGMESCGIHETVYNSIMKCDVDIRKD 105
+GN F C E F M CG+ + N I+ C +++ K+
Sbjct: 163 VGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKN 206
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 233 IGNERFRCPEALFQPSF-LGMESCGIHETVYNSIMKCDVDIRKD 105
+GN F C E F M CG+ + N I+ C +++ K+
Sbjct: 166 VGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKN 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,967,939
Number of Sequences: 27780
Number of extensions: 141876
Number of successful extensions: 464
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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