Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30650
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    83   2e-18
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.82 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.82 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.6  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 83.4 bits (197), Expect = 2e-18
 Identities = 38/42 (90%), Positives = 40/42 (95%)
 Frame = +2

Query: 41  IGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 166
           +GRVETGVLKPG +VVFAPANITTEVKSVEMHHEAL EAVPG
Sbjct: 15  VGRVETGVLKPGMVVVFAPANITTEVKSVEMHHEALPEAVPG 56


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 716 FLRKHLSVNEVSQLYEKIVLLTALATSCPWWP 621
           F RK  S+NE  ++   I  +TA A+S   WP
Sbjct: 204 FSRKPCSINENLKMGLDIASITAQASSFVVWP 235


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 716 FLRKHLSVNEVSQLYEKIVLLTALATSCPWWP 621
           F RK  S+NE  ++   I  +TA A+S   WP
Sbjct: 204 FSRKPCSINENLKMGLDIASITAQASSFVVWP 235


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 154 FLESFVVHLHRFDFSSDVG 98
           FLE  + H  RF FSS VG
Sbjct: 68  FLEMTLAHHCRFKFSSSVG 86


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 447 QPLSTWYLPSLYV*SPS---RNSHPSVVLLSVT 536
           Q  ++W+ PS+Y  SP    R+ +PS + +S +
Sbjct: 183 QVAASWHTPSMYPLSPGAGFRSPYPSALPISTS 215


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 447 QPLSTWYLPSLYV*SPS---RNSHPSVVLLSVT 536
           Q  ++W+ PS+Y  SP    R+ +PS + +S +
Sbjct: 75  QVAASWHTPSMYPLSPGAGFRSPYPSALPISTS 107


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 112 SSDVGGGKDNNGTWFQHTSF 53
           ++ V GG +NNGT   H+ F
Sbjct: 182 AAQVSGGNNNNGTPGGHSGF 201


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = -2

Query: 136 VHLHRFDFSSDVGGGKDNNGTWFQHTSFNSADFWLVTDYKLR 11
           ++L  FDF  +     D++   +     +  D +L  DY ++
Sbjct: 360 INLQAFDFHREREPVADHHANLYSRPGDSGLDLFLSVDYAVK 401


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 53  ETGVLKPGTIVVFAPANITTEVKS 124
           ETG ++PG I    P   T EV++
Sbjct: 96  ETGSIRPGVIGGSKPRVATPEVEN 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,244
Number of Sequences: 336
Number of extensions: 3723
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)